UTHealth

[rgabr]

Name: (Refaat Gabr)

Number of datasets (sets of inversion recovery measurements: (1)

Submission Checklist:

• [X] Have you collected all the raw data exported directly from scanner into a single folder?
• [X] For each dataset, did you create one (or two, if complex) NIFTI files with each inversion time measurement in the "time" dimension?
• [X] For each NIFTI file, did you create a YAML file with the same filename containing the necessary details about your dataset for the challenge? (See sample submission on OSF.io for a template)

When your data is ready for review, please comment in your issue and email a link to a Google Drive folder (or other online data sharing service) containing your data to: rrsg.challenge@gmail.com.

[rgabr]

Data ready; email sent with Google Drive link.

[mathieuboudreau]

Hi @rgabr ,

Thanks for your submission. I think that mistakenly, the phase images were converted to NIFTI instead of magnitude, as the NIFTI files you provided to me didn't appear right. Thankfully you included the raw DICOMS, so when I did the conversion to NIFTI myself, I was able to choose the magnitude data instead.

Your data was uploaded to the RRSG/qMRSG OSF.io repo: https://osf.io/b2sm8/

I tested it in the processing pipeline, and it ran successfully.

Pipeline output:

Run it here:

[rgabr]

Thank you!

Refaat Gabr

On Mon, Feb 24, 2020 at 2:11 PM Mathieu Boudreau notifications@github.com wrote:

Hi @rgabr https://github.com/rgabr ,

Thanks for your submission. I think that mistakenly, the phase images were converted to NIFTI instead of magnitude, as the NIFTI files you provided to me didn't appear right. Thankfully you included the raw DICOMS, so when I did the conversion to NIFTI myself, I was able to choose the magnitude data instead.

Your data was uploaded to the RRSG/qMRSG OSF.io repo: https://osf.io/b2sm8/

I tested it in the processing pipeline, and it ran successfully.

Pipeline output:

[image: Capture d’écran 2020-02-24 à 16 37 25] https://user-images.githubusercontent.com/1421029/75187227-381bb300-5724-11ea-9c5c-6aedd1f0ae4b.png

Run it here:

[image: Binder] https://mybinder.org/v2/gh/rrsg2020/data_submission/issue_08?filepath=data_submission%2Ft1_fitting.ipynb

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[mathieuboudreau]

Hello @rgabr,

As you are the designated person listed for your dataset, the challenge organizers sent you an email (email listed in your submission (refaat.e.gabr(AT)uth.tmc.edu) last July (subject: "2020 ISMRM T1 mapping challenge data consent"), but did not receive a response. Do you have an new email that we could resend it to, otherwise could you please check if the original email was received? Thank you.

[rgabr]

Hi Mathieu,

Yes I am the person of contact and organizer for UTHealth participation. I am sorry I missed your email earlier as I moved to another position outside UTHealth (but still associated with UTHealth). I will look into the previous email ASAP and act accordingly. Apologies again.

Best, Refaat

Refaat Gabr, PhD Principal Scientist, Biogen Adjunct Associate Professor, UTHealth

On Fri, Feb 17, 2023 at 8:48 PM Mathieu Boudreau, PhD < @.***> wrote:

Hello @rgabr https://github.com/rgabr,

As you are the designated person listed for your dataset, the challenge organizers sent you an email (email listed in your submission (refaat.e.gabr(AT)uth.tmc.edu) last July (subject: "2020 ISMRM T1 mapping challenge data consent"), but did not receive a response. Do you have an new email that we could resend it to, otherwise could you please check if the original email was received? Thank you.

— Reply to this email directly, view it on GitHub https://github.com/rrsg2020/data_submission/issues/8#issuecomment-1435466114, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD6I4QTZF5L2AF55GCZHLLDWYA2BXANCNFSM4KYXUCIA . You are receiving this because you were mentioned.Message ID: @.***>