downloading archaea genomes from refseq

rrwick / Bacsort

a collection of scripts for organising bacterial genomes by species

GNU General Public License v3.0

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Open ganiatgithub opened 4 years ago

ganiatgithub commented 4 years ago

Hi,

When I run: download_genomes.sh "Methanosarcina"

It gives me: find: refseq/bacteria: No such file or directory

Any tips on downloading from an archaeal genus?

Many thanks!

Gaofeng

Nilad commented 4 years ago

The tool is preconfigured for bacteria kingdom.

I suggest you to download this bash script https://github.com/rrwick/Bacsort/blob/master/scripts/download_genomes.sh and replace bacteria term by archea and continue to use the next steps of this tool.