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rrwick / Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
http://rrwick.github.io/Bandage/
GNU General Public License v3.0
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Load CSV data - extension request #105

Closed jkoszucki closed 3 years ago

jkoszucki commented 3 years ago

Hi @epruesse!

First of all, thank you for such an amazing tool as Bandage.

Recently I use Bandage a lot and I was thinking if there is a possibility to add an extension to the load CSV data function (or any other), namely to be able to indicate the coordinates of the region within a contig of interest (eg. contig number, start position, end position). In my particular case at the moment by coloring the contig I don't know in which particular part of it my sequence occurs. This would allow to avoid relying on the sequence similarity and visualize potential (not known) paths within the graph.

I would be grateful for considering this. It would help me a lot!

Best, Janusz

epruesse commented 3 years ago

@jkoszucki - I wrote the csv import several years ago, but that was my only contribution to Bandage, I'm not the author, I just wanted to add in some data of mine back then. You probably want @rrwick's help here. I don't even know what he's done with the code in the mean time, and I am way behind on feature-requests/bug-reports on my own (un)published tools...

jkoszucki commented 3 years ago

@epruesse, thank you for quick response. I completely understand that, especially that last changes in code were done few years ago. Nevertheless, thanks for response!