IDBA to GFA

[rbeinart]

Hi there,

I'm getting the below error when using the IDBA to GFA script and I can't figure out why - any ideas?

Thanks! -Roxanne-

python /n/girguis_lab/Users/rbeinart/Apps/IDBA-to-GFA-master/idba_to_gfa.py --print_graph /n/girguis_lab/Everyone/idba-1.1.1/src/tools/print_graph.cpp 100616_CSS_plus_neg_IDBA_scaffolds_100kmer.fna 100 > 100616_CSS_plus_neg_IDBA_scaffolds.gfa Traceback (most recent call last): File "/n/girguis_lab/Users/rbeinart/Apps/IDBA-to-GFA-master/idba_to_gfa.py", line 153, in main() File "/n/girguis_lab/Users/rbeinart/Apps/IDBA-to-GFA-master/idba_to_gfa.py", line 30, in main connection_str = subprocess.check_output([args.print_graph, '-k', str(args.kmer), '--max_length', '1000000000', args.idba_assembly, temp_fasta]).decode() File "/n/sw/fasrcsw/apps/Core/Anaconda3/4.3.0-fasrc01/x/lib/python3.6/subprocess.py", line 336, in check_output *kwargs).stdout File "/n/sw/fasrcsw/apps/Core/Anaconda3/4.3.0-fasrc01/x/lib/python3.6/subprocess.py", line 403, in run with Popen(popenargs, **kwargs) as process: File "/n/sw/fasrcsw/apps/Core/Anaconda3/4.3.0-fasrc01/x/lib/python3.6/subprocess.py", line 707, in init restore_signals, start_new_session) File "/n/sw/fasrcsw/apps/Core/Anaconda3/4.3.0-fasrc01/x/lib/python3.6/subprocess.py", line 1326, in _execute_child raise child_exception_type(errno_num, err_msg) OSError: [Errno 8] Exec format error