I have an assembly that I want to bin using information stored in a graph. Specifically, I blasted a sequence I am interested in (e.g. 16S) in Bandage (green node), and now I would like to extract all contigs that are connected to this node of the hit (green + red nodes). How can I do this in Bandage?
UPDATE: OK I see now that when I "save the entire graph", the contigs are actually outputted. But when I look at the minimum size of the contigs in both files, the minimum contig size of my original file is 100 bp, whereas the "saved graph fasta" has a minimum of 6. How come?
I have an assembly that I want to bin using information stored in a graph. Specifically, I blasted a sequence I am interested in (e.g. 16S) in Bandage (green node), and now I would like to extract all contigs that are connected to this node of the hit (green + red nodes). How can I do this in Bandage?
UPDATE: OK I see now that when I "save the entire graph", the contigs are actually outputted. But when I look at the minimum size of the contigs in both files, the minimum contig size of my original file is 100 bp, whereas the "saved graph fasta" has a minimum of 6. How come?