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rrwick / Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
http://rrwick.github.io/Bandage/
GNU General Public License v3.0
579 stars 96 forks source link

0 edges for all assemblies #82

Open mlazzeroni opened 4 years ago

mlazzeroni commented 4 years ago

Hi,

I'm wondering if Bandage works well on genomes sequenced via Truseq and with 10x chromium, assembled with Abyss and supernova, respectively? I ran several assemblies of Truseq short-read whole genomes through Bandage. Bandage found no edges. I assumed this was a result of poor assemblies but then I ran through a genome assembly that I know to have edges (one sequenced with 10x chromium and assembled with the Supernova pipeline). However, I found no edges here either. Any idea why this problem is happening?

Maggie

stevenjdunn commented 4 years ago

Are you loading in a .gfa file?