When using --require both for realtime, if I am using presets, I get "Error: --require_both can only be used with two models (start and end)". Does this imply that I need to generate my own models for the start and end?
When running deepbinner realtime to demultiplex (pre-basecalling), the generation of compressed binned fast5 files appears to continue much longer (~12h) than porechop (~4h). Is there something I am doing correctly, or a way to skip the last step where deepbinner attempts to compress the fast5s into one file or a smaller file?
Great tool, testing it out now.
Two questions:
Thanks.