search

rrwick / Deepbinner

a signal-level demultiplexer for Oxford Nanopore reads
GNU General Public License v3.0
124 stars 23 forks source link

Feature request #6

Open gwaldbieser opened 6 years ago

gwaldbieser commented 6 years ago

Can we choose whether or not to gzip the fastq files in 'bin'? Alternately, can deepbinner bin make use of pigz to compress the files?

rrwick commented 5 years ago

Okay, I've implemented this in a fairly simple way: if Deepbinner sees that pigz is available, it uses that instead of gzip. There is still no option to not zip at all... is that important to you?

You'll find the change on the master branch, and a new release of Deepbinner (v0.2.0) is imminent and will have it as well.

Ryan