search

rrwick / Metagenomics-Index-Correction

GNU General Public License v3.0
78 stars 9 forks source link

Reference data necessary for Braken. #4

Open cerebis opened 5 years ago

cerebis commented 5 years ago

For your extension of the GTDB, it would be great if you could provide the full Kraken folder from which to build a Braken database.

i.e. from Braken's documentation

${KRAKEN_DB} is the path to a built Kraken database which also must contain:

  • the taxonomy/nodes.dmp file
  • and library sequences .fna, .fa, or *.fasta in the library directory.
cazzlewazzle89 commented 5 years ago

It would be great if you could also make this available for the NCBI_r88_Human17k database please!

wyanren commented 3 years ago

I wanna figure out if we must need a bracken database to translate <.krak2> into <.report>, for further visualisation.

ntromas commented 1 year ago

Hi everyone, any news for the library ? Would be great to be able to use Bracken too.

Cheers!