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rrwick / Porechop

adapter trimmer for Oxford Nanopore reads
GNU General Public License v3.0
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Trim a fixed number of bases of read ends #19

Closed jonhultqvist closed 7 years ago

jonhultqvist commented 7 years ago

Thanks for a great tool,

I was wondering if there is a way to trim a fixed number of bases of each read end, even if no adaptor sequence was discovered. Such a flag/feature could be useful when trimming 1D and 1D^2 reads from SQK-LSK308 sequencing runs.

Cheers Jon

wdecoster commented 7 years ago

Although I agree it's easier to have everything in the same tool, the feature you request can be done using NanoFilt...

jonhultqvist commented 7 years ago

Okey, thank you. I will try that tool instead!