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rrwick / Porechop

adapter trimmer for Oxford Nanopore reads
GNU General Public License v3.0
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Running Porechop on Windows #59

Open cwachtel opened 6 years ago

cwachtel commented 6 years ago

Hi,

I have been trying to use Porechop on windows. I have tried 2 different approaches: 1) Virtualmachine and Ubuntu 2) using a linux subsystem in Win10

With both of them I run into the same problem: error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'

I have tried using Make to overcome this error, and then I get a different error: make: *** [porechop/src/adapter_align.o] Error 127

I am at a bit of a loss, and I really need to get this running to move forward on a specific project. Any help would be greatly appreciated.

Thanks Chaim

cwachtel commented 6 years ago

Hi,

Nevermind.. I was able to de-bug everything. It turns out that when I installed Ubuntu I did not install gcc or g++. Once they were both installed I was able to get porechop installed...

Chaim