rrwick / Porechop

adapter trimmer for Oxford Nanopore reads
GNU General Public License v3.0
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installtion Error #92

Closed GUNAJIV closed 1 year ago

GUNAJIV commented 1 year ago

running install /home/centyle/anaconda3/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib creating build/lib/porechop copying porechop/cpp_function_wrappers.py -> build/lib/porechop copying porechop/version.py -> build/lib/porechop copying porechop/misc.py -> build/lib/porechop copying porechop/nanopore_read.py -> build/lib/porechop copying porechop/porechop.py -> build/lib/porechop copying porechop/init.py -> build/lib/porechop copying porechop/adapters.py -> build/lib/porechop Cleaning previous compilation: make clean rm -f porechop/src/alignment.o porechop/src/adapter_align.o Compiling Porechop: make -j 8 g++ -std=c++14 -Iporechop/include -fPIC -O3 -D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porechop/src/alignment.o porechop/src/alignment.cpp make: g++: No such file or directory make: *** [Makefile:56: porechop/src/alignment.o] Error 127 running install_lib copying build/lib/porechop/cpp_function_wrappers.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/version.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/misc.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/nanopore_read.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/porechop.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/init.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop copying build/lib/porechop/adapters.py -> /home/centyle/anaconda3/lib/python3.9/site-packages/porechop byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/version.py to version.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/misc.py to misc.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/nanopore_read.py to nanopore_read.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/porechop.py to porechop.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/init.py to init.cpython-39.pyc byte-compiling /home/centyle/anaconda3/lib/python3.9/site-packages/porechop/adapters.py to adapters.cpython-39.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' removing '/home/centyle/anaconda3/lib/python3.9/site-packages/porechop-0.2.4-py3.9.egg-info' (and everything under it) Copying porechop.egg-info to /home/centyle/anaconda3/lib/python3.9/site-packages/porechop-0.2.4-py3.9.egg-info running install_scripts Installing porechop script to /home/centyle/anaconda3/bin error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'