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rrwick / Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes
GNU General Public License v3.0
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Command 'raven' not found #33

Closed Chuangsc closed 2 years ago

Chuangsc commented 2 years ago

Hello,

I had installed trycycler through conda. But when I ran raven for one subset of reads, it showed that not found "raven" command. Later, I tried to installed Raven through conda (conda install -c bioconda raven-assembler), it still didn't work. Could you kindly help me to solve the problem? Thanks much!

MostafaYA commented 2 years ago

Hello, I tried this installtion and it worked 

git clone https://github.com/lbcb-sci/raven && cd raven
cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release 
cmake --build build

If needed, you may call the full path to raven if it is not in your $PATH

rrwick commented 2 years ago

I too have had success building Raven as @MostafaYA described. It compiles to a single executable file (build/bin/raven) so I copy this file to somewhere that is already in my $PATH (I use ~/.local/bin for things like this).

Ryan