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rrwick / Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes
GNU General Public License v3.0
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trycycler reconcile: error: argument trycycler reconcile: error: argument trycycler reconcile: error: argument --min_1kbp_identity: invalid int value: '25.0' #62

Closed danpal96 closed 1 year ago

danpal96 commented 1 year ago

trycycler 0.5.4

The options --min_1kbp_identity can't parse floats, for example, 25.0 gives the next error:

trycycler reconcile: error: argument trycycler reconcile: error: argument trycycler reconcile: error: argument --min_1kbp_identity: invalid int value: '25.0'
danpal96 commented 1 year ago

the same with min_read_cov from trycycler consensus

rrwick commented 1 year ago

Fixed in aa40d3f. Thanks!