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rrwick / Unicycler

hybrid assembly pipeline for bacterial genomes
GNU General Public License v3.0
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Problem of "terminate called after throwing an instance of 'std::bad_alloc'". #264

Open monjou-lai opened 3 years ago

monjou-lai commented 3 years ago

Hello, unicycler,

I tried to run the hybrid method using Illumina & nanopore fastq for a phage genome, but encountered the termination with the last few lines of message below:

Aligning long reads to graph using minimap

Saving to //out_unicycler/miniasm_assembly/01_assembly_reads.fastq: 42 short-read contigs 80,274 long reads

Finding overlaps with minimap... terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc Aborted (core dumped)

Wonder what I could do to check.

Regards, MJ

mesti90 commented 1 year ago

@monjou-lai Were you able to solve this issue? I also met the same problem