search

rrwick / Unicycler

hybrid assembly pipeline for bacterial genomes
GNU General Public License v3.0
535 stars 132 forks source link

AttributeError: module 'collections' has no attribute 'Hashable' #287

Closed BioinfoRDX closed 2 years ago

BioinfoRDX commented 2 years ago

Hi,

I have this error with spade when I'm running Unicycler

AttributeError: module 'collections' has no attribute 'Hashable'

I installed Unicycler using conda

Best

kayobianco commented 2 years ago

Hello everyone,

I have the same problem, can the developer help us?

missuse commented 2 years ago

There appears to be a problem with the conda recipe for unicycler 0.5. However manually installing dependencies from conda and then installing Unicycler from github works without problems.

rrwick commented 2 years ago

There seems to be an incompatibility with SPAdes and Python v3.10: https://github.com/ablab/spades/issues/863

That issue thread suggests that a new version of SPAdes is coming soon with a fix, which will hopefully solve the problem. But until then, running with Python v3.9 should get around it.

Ryan