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rrwick / Unicycler

hybrid assembly pipeline for bacterial genomes
GNU General Public License v3.0
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Stuck on the long read alignments step #299

Open sakusankun opened 2 years ago

sakusankun commented 2 years ago

Here are some parameters in my command: --no_miniasm --existing_long_read_assembly The program dissappeared at the minimap stage: And the currently existing files are: “001_best_spades”,“ 002_overlaps_removed”, and the fold simple_bridging with “all_segments.fasta” in it.

sakusankun commented 2 years ago

In the log file, it ends at: Unicycler uses long read alignments (from minimap) to resolve simple repeat structures in the graph. This takes care of some "low-hanging fruit" of the graph simplification.

Aligning long reads to graph using minimap

sakusankun commented 2 years ago

Could you please help me with this issue?