rs-station / laue-dials

A package for analyzing Laue x-ray crystallography data using the DIALS framework.
https://rs-station.github.io/laue-dials/
MIT License
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sequence_to_stills output parameters unsuccessful in renaming experiment & reflection files #34

Closed maggie-klureza closed 9 months ago

maggie-klureza commented 10 months ago

I ran the code:

laue.sequence_to_stills monochromatic_NaI_3_02.expt monochromatic_NaI_3_02.refl \
    output.experiments=stills_NaI_3_02.expt \
    output.reflections=stills_NaI_3_02.refl \
    output.log=laue.sequence_to_stills_NaI_3_02.log

The initial output I got said the parameters had been changed:

The following parameters have been modified:

output {
  experiments = "stills_NaI_3_02.expt"
  reflections = "stills_NaI_3_02.refl"
  log = "laue.sequence_to_stills_NaI_3_02.log"
}
input {
  experiments = monochromatic_NaI_3_02.expt
  reflections = monochromatic_NaI_3_02.refl
}

However, the files that were actually written out were stills.expt, stills.refl, and laue.sequence_to_stills_NaI_3_02.log. For some reason, the log gets renamed but the other two files do not.

PrinceWalnut commented 9 months ago

Fixed by this commit