run filter_vcfs.py error

rsinghlab / MADDi

This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

MIT License

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run filter_vcfs.py error #15

Closed zhouqixiang35 closed 1 year ago

zhouqixiang35 commented 1 year ago

When I run filter vcfs.py，error:Error -3 while decompressing data: invalid distance too far back appears. How can this be resolved? The data is downloaded from ADNI using ADNI WGs Data - GATK SNV+Index call chr1 of 23, and then decompressed using the tar command to enter the filter vcfs.py.

michalg04 commented 1 year ago

Hi there! Thanks for reading our paper. We followed the downloading steps from this paper: https://www.nature.com/articles/s41598-020-74399-w located in their appendix. I have not seen this error before, so I am not sure if this has to do with how you downloaded or with version incompatibility.