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rsinghlab / MADDi

This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).
MIT License
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Couldn't create the file "overlap_test_set.csv" #6

Closed ManojKumar002 closed 1 year ago

ManojKumar002 commented 1 year ago

To execute "preprocess_genetic/create_genetic_dataset.ipynb" , we need the dataset "overlap_test_set.csv", which will be created after executing "preprocess_overlap/create_overlap_dataset.ipynb".

But to execute "preprocess_overlap/create_overlap_dataset.ipynb" we need the dataset "vcf_select.pkl" , which will be created after executing "preprocess_genetic/create_genetic_dataset.ipynb".

In simple words the two files "preprocess_genetic/create_genetic_dataset.ipynb" and "preprocess_overlap/create_overlap_dataset.ipynb" depends on each other to execute.

Can you please give a clarification to this?

michalg04 commented 1 year ago

Hi there, Thank you for pointing this out! Yes - this is my mistake that was created when cleaning the code! I apologize and will work on fixing it now. The order should be to create the "all_vcfs.pkl" file first, then use it in the create_overlap_dataset.ipynb instead of the "vcf_select.pkl". I will make that correction in the code. Thanks!