Open hcutler99 opened 6 days ago
Thanks for opening.
To use a GPU with TensorFlow on Windows, you need to be running R/Python/TensorFlow in WSL. It sounds like you're running the windows-native R and RStudio builds, and not via WSL.
If you want to use RStudio with WSL, the easiest way is via the open-source RStudio Server. This article helps you get set up: https://support.posit.co/hc/en-us/articles/360049776974-Using-RStudio-Server-in-Windows-WSL2
Hi Tomasz,
Thanks for your help, really appreciate it. Followed those instructions but am now having trouble installing tensorflow into RStudio Server (using the code that you posted here: https://github.com/rstudio/keras3/issues/1311).
Would really appreciate if you had a minute to look at the below diagnostic ouputs.
Thanks again, Harry
> install.packages("remotes")
Installing package into ‘/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.5.0.tar.gz'
Content type 'application/x-gzip' length 164496 bytes (160 KB)
==================================================
downloaded 160 KB
* installing *source* package ‘remotes’ ...
** package ‘remotes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (remotes)
The downloaded source packages are in
‘/tmp/Rtmp9r6qrA/downloaded_packages’
> remotes::install_github(sprintf("rstudio/%s", c("reticulate", "tensorflow", "keras")))
Downloading GitHub repo rstudio/reticulate@HEAD
Running `R CMD build`...
* checking for file ‘/tmp/Rtmp9r6qrA/remotes66ba167474a7/rstudio-reticulate-65e17a3/DESCRIPTION’ ... OK
* preparing ‘reticulate’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘reticulate_1.39.0.9000.tar.gz’
Installing package into ‘/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4’
(as ‘lib’ is unspecified)
* installing *source* package ‘reticulate’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c event_loop.cpp -o event_loop.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c libpython.cpp -o libpython.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c output.cpp -o output.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pending_py_calls_notifier.cpp -o pending_py_calls_notifier.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c python.cpp -o python.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c readline.cpp -o readline.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2y82rL/r-base-4.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.cpp -o signals.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o reticulate.so RcppExports.o event_loop.o libpython.o output.o pending_py_calls_notifier.o python.o readline.o signals.o -L/usr/lib/R/lib -lR
installing to /home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/00LOCK-reticulate/00new/reticulate/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (reticulate)
Downloading GitHub repo rstudio/tensorflow@HEAD
Running `R CMD build`...
* checking for file ‘/tmp/Rtmp9r6qrA/remotes66ba259436e1/rstudio-tensorflow-4da7560/DESCRIPTION’ ... OK
* preparing ‘tensorflow’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘tensorflow_2.16.0.9000.tar.gz’
Installing package into ‘/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4’
(as ‘lib’ is unspecified)
* installing *source* package ‘tensorflow’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tensorflow)
Downloading GitHub repo rstudio/keras@HEAD
Running `R CMD build`...
* checking for file ‘/tmp/Rtmp9r6qrA/remotes66baf2c3bf8/rstudio-keras3-6729243/DESCRIPTION’ ... OK
* preparing ‘keras3’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘keras3_1.2.0.9000.tar.gz’
Installing package into ‘/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4’
(as ‘lib’ is unspecified)
* installing *source* package ‘keras3’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (keras3)
> reticulate::miniconda_uninstall() # start with a blank slate
> reticulate::install_miniconda()
* Installing Miniconda -- please wait a moment ...
* Downloading 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh' ...
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'
Content type 'application/octet-stream' length 148337011 bytes (141.5 MB)
==================================================
downloaded 141.5 MB
+ /usr/bin/bash /tmp/Rtmp9r6qrA/Miniconda3-latest-Linux-x86_64.sh -b -u -p '/home/doc_wsl2/.local/share/r-miniconda'
PREFIX=/home/doc_wsl2/.local/share/r-miniconda
Unpacking payload ...
Installing base environment...
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
+ /home/doc_wsl2/.local/share/r-miniconda/bin/conda update --yes --name base conda
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
+ /home/doc_wsl2/.local/share/r-miniconda/bin/conda create --yes --name r-reticulate 'python=3.10' numpy --quiet -c conda-forge
Channels:
- conda-forge
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/doc_wsl2/.local/share/r-miniconda/envs/r-reticulate
added / updated specs:
- numpy
- python=3.10
The following packages will be downloaded:
package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | conda_forge 3 KB conda-forge
_openmp_mutex-4.5 | 2_gnu 23 KB conda-forge
bzip2-1.0.8 | h4bc722e_7 247 KB conda-forge
ca-certificates-2024.8.30 | hbcca054_0 155 KB conda-forge
ld_impl_linux-64-2.43 | h712a8e2_2 654 KB conda-forge
libblas-3.9.0 |25_linux64_openblas 15 KB conda-forge
libcblas-3.9.0 |25_linux64_openblas 15 KB conda-forge
libffi-3.4.2 | h7f98852_5 57 KB conda-forge
libgcc-14.2.0 | h77fa898_1 829 KB conda-forge
libgcc-ng-14.2.0 | h69a702a_1 53 KB conda-forge
libgfortran-14.2.0 | h69a702a_1 53 KB conda-forge
libgfortran-ng-14.2.0 | h69a702a_1 53 KB conda-forge
libgfortran5-14.2.0 | hd5240d6_1 1.4 MB conda-forge
libgomp-14.2.0 | h77fa898_1 450 KB conda-forge
liblapack-3.9.0 |25_linux64_openblas 15 KB conda-forge
libnsl-2.0.1 | hd590300_0 33 KB conda-forge
libopenblas-0.3.28 |pthreads_h94d23a6_0 5.3 MB conda-forge
libsqlite-3.47.0 | hadc24fc_0 854 KB conda-forge
libstdcxx-14.2.0 | hc0a3c3a_1 3.7 MB conda-forge
libuuid-2.38.1 | h0b41bf4_0 33 KB conda-forge
libxcrypt-4.4.36 | hd590300_1 98 KB conda-forge
libzlib-1.3.1 | hb9d3cd8_2 60 KB conda-forge
ncurses-6.5 | he02047a_1 868 KB conda-forge
numpy-2.1.2 | py310hd6e36ab_0 7.5 MB conda-forge
openssl-3.3.2 | hb9d3cd8_0 2.8 MB conda-forge
pip-24.2 | pyh8b19718_1 1.2 MB conda-forge
python-3.10.15 |h4a871b0_2_cpython 24.1 MB conda-forge
python_abi-3.10 | 5_cp310 6 KB conda-forge
readline-8.2 | h8228510_1 275 KB conda-forge
setuptools-75.1.0 | pyhd8ed1ab_0 759 KB conda-forge
tk-8.6.13 |noxft_h4845f30_101 3.2 MB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.44.0 | pyhd8ed1ab_0 57 KB conda-forge
xz-5.2.6 | h166bdaf_0 409 KB conda-forge
------------------------------------------------------------
Total: 55.3 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2024.8.30-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libblas conda-forge/linux-64::libblas-3.9.0-25_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-25_linux64_openblas
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran-ng conda-forge/linux-64::libgfortran-ng-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblapack conda-forge/linux-64::liblapack-3.9.0-25_linux64_openblas
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_0
libsqlite conda-forge/linux-64::libsqlite-3.47.0-hadc24fc_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-he02047a_1
numpy conda-forge/linux-64::numpy-2.1.2-py310hd6e36ab_0
openssl conda-forge/linux-64::openssl-3.3.2-hb9d3cd8_0
pip conda-forge/noarch::pip-24.2-pyh8b19718_1
python conda-forge/linux-64::python-3.10.15-h4a871b0_2_cpython
python_abi conda-forge/linux-64::python_abi-3.10-5_cp310
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.1.0-pyhd8ed1ab_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
* Miniconda has been successfully installed at "~/.local/share/r-miniconda".
[1] "/home/doc_wsl2/.local/share/r-miniconda"
> keras::install_keras()
sh: 1: nvidia-smi: not found
Virtual environment 'r-tensorflow' removed.
Using Python: /home/doc_wsl2/.pyenv/versions/3.10.15/bin/python3.10
Creating virtual environment 'r-tensorflow' ...
+ /home/doc_wsl2/.pyenv/versions/3.10.15/bin/python3.10 -m venv /home/doc_wsl2/.virtualenvs/r-tensorflow
Done!
Installing packages: pip, wheel, setuptools
+ /home/doc_wsl2/.virtualenvs/r-tensorflow/bin/python -m pip install --upgrade pip wheel setuptools
Requirement already satisfied: pip in ./.virtualenvs/r-tensorflow/lib/python3.10/site-packages (23.0.1)
Collecting pip
Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
Collecting wheel
Using cached wheel-0.44.0-py3-none-any.whl (67 kB)
Requirement already satisfied: setuptools in ./.virtualenvs/r-tensorflow/lib/python3.10/site-packages (65.5.0)
Collecting setuptools
Using cached setuptools-75.2.0-py3-none-any.whl (1.2 MB)
Installing collected packages: wheel, setuptools, pip
Attempting uninstall: setuptools
Found existing installation: setuptools 65.5.0
Uninstalling setuptools-65.5.0:
Successfully uninstalled setuptools-65.5.0
Attempting uninstall: pip
Found existing installation: pip 23.0.1
Uninstalling pip-23.0.1:
Successfully uninstalled pip-23.0.1
Successfully installed pip-24.3.1 setuptools-75.2.0 wheel-0.44.0
Virtual environment 'r-tensorflow' successfully created.
Using virtual environment 'r-tensorflow' ...
+ /home/doc_wsl2/.virtualenvs/r-tensorflow/bin/python -m pip install --upgrade --no-user 'numpy<2' 'tensorflow==2.15.*' tensorflow-hub tensorflow-datasets scipy requests Pillow h5py pandas pydot
Collecting numpy<2
Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Collecting tensorflow==2.15.*
Using cached tensorflow-2.15.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB)
Collecting tensorflow-hub
Using cached tensorflow_hub-0.16.1-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting tensorflow-datasets
Using cached tensorflow_datasets-4.9.6-py3-none-any.whl.metadata (9.5 kB)
Collecting scipy
Using cached scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)
Collecting requests
Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
Collecting Pillow
Using cached pillow-11.0.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.1 kB)
Collecting h5py
Using cached h5py-3.12.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB)
Collecting pandas
Using cached pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)
Collecting pydot
Using cached pydot-3.0.2-py3-none-any.whl.metadata (10 kB)
Collecting absl-py>=1.0.0 (from tensorflow==2.15.*)
Using cached absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB)
Collecting astunparse>=1.6.0 (from tensorflow==2.15.*)
Using cached astunparse-1.6.3-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting flatbuffers>=23.5.26 (from tensorflow==2.15.*)
Using cached flatbuffers-24.3.25-py2.py3-none-any.whl.metadata (850 bytes)
Collecting gast!=0.5.0,!=0.5.1,!=0.5.2,>=0.2.1 (from tensorflow==2.15.*)
Using cached gast-0.6.0-py3-none-any.whl.metadata (1.3 kB)
Collecting google-pasta>=0.1.1 (from tensorflow==2.15.*)
Using cached google_pasta-0.2.0-py3-none-any.whl.metadata (814 bytes)
Collecting libclang>=13.0.0 (from tensorflow==2.15.*)
Using cached libclang-18.1.1-py2.py3-none-manylinux2010_x86_64.whl.metadata (5.2 kB)
Collecting ml-dtypes~=0.3.1 (from tensorflow==2.15.*)
Using cached ml_dtypes-0.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (20 kB)
Collecting opt-einsum>=2.3.2 (from tensorflow==2.15.*)
Using cached opt_einsum-3.4.0-py3-none-any.whl.metadata (6.3 kB)
Collecting packaging (from tensorflow==2.15.*)
Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 (from tensorflow==2.15.*)
Using cached protobuf-4.25.5-cp37-abi3-manylinux2014_x86_64.whl.metadata (541 bytes)
Requirement already satisfied: setuptools in ./.virtualenvs/r-tensorflow/lib/python3.10/site-packages (from tensorflow==2.15.*) (75.2.0)
Collecting six>=1.12.0 (from tensorflow==2.15.*)
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting termcolor>=1.1.0 (from tensorflow==2.15.*)
Using cached termcolor-2.5.0-py3-none-any.whl.metadata (6.1 kB)
Collecting typing-extensions>=3.6.6 (from tensorflow==2.15.*)
Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting wrapt<1.15,>=1.11.0 (from tensorflow==2.15.*)
Using cached wrapt-1.14.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.7 kB)
Collecting tensorflow-io-gcs-filesystem>=0.23.1 (from tensorflow==2.15.*)
Using cached tensorflow_io_gcs_filesystem-0.37.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB)
Collecting grpcio<2.0,>=1.24.3 (from tensorflow==2.15.*)
Using cached grpcio-1.67.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB)
Collecting tensorboard<2.16,>=2.15 (from tensorflow==2.15.*)
Using cached tensorboard-2.15.2-py3-none-any.whl.metadata (1.7 kB)
Collecting tensorflow-estimator<2.16,>=2.15.0 (from tensorflow==2.15.*)
Using cached tensorflow_estimator-2.15.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting keras<2.16,>=2.15.0 (from tensorflow==2.15.*)
Using cached keras-2.15.0-py3-none-any.whl.metadata (2.4 kB)
Collecting tf-keras>=2.14.1 (from tensorflow-hub)
Using cached tf_keras-2.18.0-py3-none-any.whl.metadata (1.6 kB)
Collecting click (from tensorflow-datasets)
Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting dm-tree (from tensorflow-datasets)
Using cached dm_tree-0.1.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.9 kB)
Collecting immutabledict (from tensorflow-datasets)
Using cached immutabledict-4.2.0-py3-none-any.whl.metadata (3.4 kB)
Collecting promise (from tensorflow-datasets)
Using cached promise-2.3-py3-none-any.whl
Collecting psutil (from tensorflow-datasets)
Using cached psutil-6.1.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB)
Collecting pyarrow (from tensorflow-datasets)
Using cached pyarrow-17.0.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
Collecting simple-parsing (from tensorflow-datasets)
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Collecting etils>=1.6.0 (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
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Requirement already satisfied: wheel<1.0,>=0.23.0 in ./.virtualenvs/r-tensorflow/lib/python3.10/site-packages (from astunparse>=1.6.0->tensorflow==2.15.*) (0.44.0)
Collecting fsspec (from etils[enp,epath,epy,etree]>=1.6.0; python_version < "3.11"->tensorflow-datasets)
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INFO: pip is looking at multiple versions of tf-keras to determine which version is compatible with other requirements. This could take a while.
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Installing collected packages: pytz, libclang, flatbuffers, dm-tree, zipp, wrapt, urllib3, tzdata, typing-extensions, tqdm, toml, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, six, pyparsing, pyasn1, psutil, protobuf, Pillow, packaging, opt-einsum, oauthlib, numpy, MarkupSafe, markdown, keras, importlib_resources, immutabledict, idna, grpcio, gast, fsspec, etils, docstring-parser, click, charset-normalizer, certifi, cachetools, absl-py, werkzeug, tensorflow-metadata, simple-parsing, scipy, rsa, requests, python-dateutil, pydot, pyasn1-modules, pyarrow, promise, ml-dtypes, h5py, google-pasta, astunparse, requests-oauthlib, pandas, google-auth, google-auth-oauthlib, array-record, tensorboard, tensorflow-datasets, tensorflow, tf-keras, tensorflow-hub
Successfully installed MarkupSafe-3.0.2 Pillow-11.0.0 absl-py-2.1.0 array-record-0.5.1 astunparse-1.6.3 cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.4.0 click-8.1.7 dm-tree-0.1.8 docstring-parser-0.16 etils-1.10.0 flatbuffers-24.3.25 fsspec-2024.10.0 gast-0.6.0 google-auth-2.35.0 google-auth-oauthlib-1.2.1 google-pasta-0.2.0 grpcio-1.67.0 h5py-3.12.1 idna-3.10 immutabledict-4.2.0 importlib_resources-6.4.5 keras-2.15.0 libclang-18.1.1 markdown-3.7 ml-dtypes-0.3.2 numpy-1.26.4 oauthlib-3.2.2 opt-einsum-3.4.0 packaging-24.1 pandas-2.2.3 promise-2.3 protobuf-3.20.3 psutil-6.1.0 pyarrow-17.0.0 pyasn1-0.6.1 pyasn1-modules-0.4.1 pydot-3.0.2 pyparsing-3.2.0 python-dateutil-2.9.0.post0 pytz-2024.2 requests-2.32.3 requests-oauthlib-2.0.0 rsa-4.9 scipy-1.14.1 simple-parsing-0.1.6 six-1.16.0 tensorboard-2.15.2 tensorboard-data-server-0.7.2 tensorflow-2.15.1 tensorflow-datasets-4.9.6 tensorflow-estimator-2.15.0 tensorflow-hub-0.16.1 tensorflow-io-gcs-filesystem-0.37.1 tensorflow-metadata-1.16.1 termcolor-2.5.0 tf-keras-2.15.1 toml-0.10.2 tqdm-4.66.5 typing-extensions-4.12.2 tzdata-2024.2 urllib3-2.2.3 werkzeug-3.0.6 wrapt-1.14.1 zipp-3.20.2
Installation complete.
Restarting R session...
> tensorflow::as_tensor("Hello World")
Error: Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/home/doc_wsl2/.pyenv/versions/3.10.15/bin/python3.10
Python exception encountered:
Traceback (most recent call last):
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/__init__.py", line 48, in <module>
from tensorflow._api.v2 import __internal__
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _r
> reticulate::py_config()
python: /home/doc_wsl2/.virtualenvs/r-tensorflow/bin/python
libpython: /home/doc_wsl2/.pyenv/versions/3.10.15/lib/libpython3.10.so
pythonhome: /home/doc_wsl2/.virtualenvs/r-tensorflow:/home/doc_wsl2/.virtualenvs/r-tensorflow
version: 3.10.12 (main, Sep 11 2024, 15:47:36) [GCC 11.4.0]
numpy: /home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/numpy
numpy_version: 1.26.4
tensorflow: /home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow
NOTE: Python version was forced by import("tensorflow")
> tensorflow::tf_config()
Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/home/doc_wsl2/.pyenv/versions/3.10.15/bin/python3.10
Python exception encountered:
Traceback (most recent call last):
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/__init__.py", line 48, in <module>
from tensorflow._api.v2 import __internal__
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/_api/v2/__internal__/__init__.py", line 8, in <module>
from tensorflow._api.v2.__internal__ import autograph
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/_api/v2/__internal__/autograph/__init__.py", line 8, in <module>
from tensorflow.python.autograph.core.ag_ctx import control_status_ctx # line: 34
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/python/autograph/core/ag_ctx.py", line 21, in <module>
from tensorflow.python.autograph.utils import ag_logging
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/python/autograph/utils/__init__.py", line 17, in <module>
from tensorflow.python.autograph.utils.context_managers import control_dependency_on_returns
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/python/autograph/utils/context_managers.py", line 19, in <module>
from tensorflow.python.framework import ops
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/python/framework/ops.py", line 40, in <module>
from tensorflow.python import pywrap_tensorflow
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.virtualenvs/r-tensorflow/lib/python3.10/site-packages/tensorflow/python/pywrap_tensorflow.py", line 17, in <module>
import ctypes
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
File "/home/doc_wsl2/.pyenv/versions/3.10.15/lib/python3.10/ctypes/__init__.py", line 8, in <module>
from _ctypes import Union, Structure, Array
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
File "/home/doc_wsl2/R/x86_64-pc-linux-gnu-library/4.4/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
ModuleNotFoundError: No module named '_ctypes'
You can install TensorFlow using the install_tensorflow() function.
> reticulate::import("tensorflow")
Error in py_module_import(module, convert = convert) :
ModuleNotFoundError: No module named '_ctypes'
Run `reticulate::py_last_error()` for details.
Hi,
Followed the installation instructions and to install keras3 with tensorflow in RStudio, however, it does not appear to have recognised my GPU.
This is my first time trying to configure a GPU so I am a bit out of my depth, but here are my machine specs. Would really appreciate any help you can provide.
Thanks and please let me know what other information I can provide to assist, Harry