Open poppymiller opened 5 years ago
Can you please provide a reproducible example? It's not clear to me how you initialized your conda environment.
Same here. Note that Das Handle ist ungültig
is German for The handle is invalid
.
reticulate::import("arviz")
Error in py_module_import(module, convert = convert) :
OSError: [WinError 6] Das Handle ist ungültig
Detailed traceback:
File "C:\ProgramData\Anaconda3\lib\site-packages\arviz\__init__.py", line 28, in <module>
from .plots import *
File "C:\ProgramData\Anaconda3\lib\site-packages\arviz\plots\__init__.py", line 19, in <module>
from .ppcplot import plot_ppc
File "C:\ProgramData\Anaconda3\lib\site-packages\arviz\plots\ppcplot.py", line 6, in <module>
from matplotlib import animation
File "C:\ProgramData\Anaconda3\lib\site-packages\matplotlib\animation.py", line 625, in <module>
class FFMpegWriter(FFMpegBase, MovieWriter):
File "C:\ProgramData\Anaconda3\lib\site-packages\matplotlib\animation.py", line 120, in wrapper
if writerClass.isAvailable():
File "C:\ProgramData\Anaconda3\lib\site-packages\matplotlib\animation.py", line 620, in isAvailable
stdout=subprocess.DEVNULL, stderr=subprocess.PIPE).stderr)
File "C:\ProgramData\Anaconda3\lib\subprocess.py", line 488, in run
with Popen(*popenarg
reticulate::py_discover_config("arviz")
returns the following:
python: C:/ProgramData/Anaconda3/python.exe
libpython: C:/ProgramData/Anaconda3/python37.dll
pythonhome: C:/ProgramData/Anaconda3
version: 3.7.5 (default, Oct 31 2019, 15:18:51) [MSC v.1916 64 bit (AMD64)]
Architecture: 64bit
numpy: C:/ProgramData/Anaconda3/Lib/site-packages/numpy
numpy_version: 1.17.3
arviz: C:\PROGRA~3\Anaconda3\lib\site-packages\arviz\__init__.p
NOTE: Python version was forced by RETICULATE_PYTHON
Ideas to make this reproducible are highly appreciated. Here's my sessionInfo()
:
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)
Matrix products: default
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C LC_TIME=German_Germany.1252
attached base packages:
[1] parallel splines stats graphics grDevices utils datasets methods base
other attached packages:
[1] reticulate_1.13.0-9004 data.table_1.12.6 patchwork_0.0.1 lattice_0.20-38
[5] ggplot2_3.2.1 gamlss_5.1-5 nlme_3.1-142 gamlss.dist_5.1-5
[9] MASS_7.3-51.4 gamlss.data_5.1-4 BAS_1.5.3
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 pillar_1.4.2 compiler_3.6.1 tools_3.6.1 jsonlite_1.6
[6] tibble_2.1.3 gtable_0.3.0 png_0.1-7 pkgconfig_2.0.3 rlang_0.4.1
[11] Matrix_1.2-17 rstudioapi_0.10 xfun_0.10 withr_2.1.2 dplyr_0.8.3
[16] knitr_1.25 rappdirs_0.3.1 grid_3.6.1 prompt_1.0.0 tidyselect_0.2.5
[21] glue_1.3.1 R6_2.4.0 survival_2.44-1.1 purrr_0.3.3 magrittr_1.5
[26] scales_1.0.0 clisymbols_1.2.0 assertthat_0.2.1 colorspace_1.4-1 lazyeval_0.2.2
[31] munsell_0.5.0 crayon_1.3.4
I am trying to install arviz (within a conda environment) and use it within an rmarkdown file. It installs fine, but gives an error when I import it: OSError: [WinError 6] The handle is invalid (see below for details). The package is stored on a shared drive.
Could this be because the arviz filename (returned using py_discover_config) is incorrect? I think it should end with .py not .p (\GFS\myusername$\Profile\appdata\Python\Python36\site-packages\arviz__init__.p)
Possibly related to this bug: https://github.com/KrishnaswamyLab/MAGIC/issues/148