Open pythiantech opened 4 years ago
Hi! I have the same problem! I have one Python file which I created from guide
def add(x, y): return x + y
And when I write in R:
library(reticulate) source_python('add.py')
I get "R Session Aborted. R encountered a fatal error. The session was terminated." without any additional info.
I just tried to call the same combinations from RGui (64-bit) and got the message:
Error in sys$stdout$flush() attempt to apply non-function
I take a look into code and found double calling of this method (sys$stdout$flush()) at py_flush_output at R/python.R (line 1168). May it be related?
I am still stuck here. This is my current session info post upgrading R as well as my OS:
R version 3.6.3 (2020-02-29)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.4
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.3 tools_3.6.3 packrat_0.5.0
I am on reticulate
version 1.15. However the crash persists.
Would appreciate some help here.
My workaround was to use VirtualBox to run a Linux machine for R and R Studio. Hope this can help you temporarily.
Ultimately, for us to be able to further diagnose we'd need a stack trace from the time when the process crashes. See https://kevinushey.github.io/blog/2015/04/13/debugging-with-lldb/ for a guide on how you could get such a stack trace.
@kevinushey thanks for this. Went through your guide. The first thing I realized was that Anaconda had changed my path. Hence while launching R, it was launching R version 3.2 and not he one that I am using on RStudio. So I amended my path :
export PATH="/usr/local/bin:$PATH"
Now when I try to launch R with lldb
attached, I am getting an error.
(lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"
Current executable set to '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
(lldb) run
error: process exited with status -1 (Error 1)
(lldb)
I am now looking at how to fix this....
@kevinushey no joy on the above. Tried the vlagrind approach as explained in your article here. However, can't even install it on Catalina:
valgrind: This formula either does not compile or function as expected on macOS
versions newer than High Sierra due to an upstream incompatibility.
Error: An unsatisfied requirement failed this build.
Any suggestions?
Right, valgrind is unfortunately not supported on macOS anymore, as far as I can tell :-/
But lldb
should work. Can you confirm that you have command line tools installed and up-to-date?
For what it's worth, it works for me:
kevinushey@Kevins-MBP:~/r/pkg/renv [master]
$ which lldb
/usr/bin/lldb
kevinushey@Kevins-MBP:~/r/pkg/renv [master]
$ R -d lldb
(lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"
Current executable set to '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
(lldb) run
Process 27613 launched: '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64)
R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
>
No joy whatsoever....Totally frustrated with this.
Anyway, for what its worth, on my terminal when I run which python
, I get /Users/dhirajkhanna/opt/anaconda3/bin/python
.
And when I run System.which('python')
in R console, I get /usr/bin/python
. Why should the locations of the executables be different?
@kevinushey this is the dump which is generated when I run repl_python()
in R GUI and try to import any python module.
Process: R [15248]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 3.6.3 GUI 1.70 El Capitan build (7735)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: R [15248]
User ID: 501
Date/Time: 2020-04-10 17:20:08.254 +0530
OS Version: Mac OS X 10.15.4 (19E287)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: FF048770-90AF-1F29-F5AE-44C54595DD90
Sleep/Wake UUID: 902EDD78-9879-4398-85B2-1C46010A89C7
Time Awake Since Boot: 42000 seconds
Time Since Wake: 260 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000040
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x40:
-->
__TEXT 0000000108dbc000-0000000108e49000 [ 564K] r-x/rwx SM=COW /Applications/R.app/Contents/MacOS/R
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_platform.dylib 0x00007fff69d5be52 _platform_strlen + 18
1 libR.dylib 0x0000000108f7123e Rf_mkChar + 14 (envir.c:3803)
2 reticulate.so 0x000000011a81056a SEXPREC* exception_to_condition_template<Rcpp::exception>(Rcpp::exception const&, bool) + 266
3 reticulate.so 0x000000011a83666a _reticulate_py_call_impl.cold + 410
Thread 1:
0 libsystem_pthread.dylib 0x00007fff69d65b68 start_wqthread + 0
Thread 2:: JavaScriptCore bmalloc scavenger
0 libsystem_kernel.dylib 0x00007fff69ca9882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69d6a425 _pthread_cond_wait + 698
2 libc++.1.dylib 0x00007fff66e39592 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 18
3 com.apple.JavaScriptCore 0x00007fff344140b4 void std::__1::condition_variable_any::wait<std::__1::unique_lock<bmalloc::Mutex> >(std::__1::unique_lock<bmalloc::Mutex>&) + 84
4 com.apple.JavaScriptCore 0x00007fff344188bb bmalloc::Scavenger::threadRunLoop() + 299
5 com.apple.JavaScriptCore 0x00007fff34418489 bmalloc::Scavenger::threadEntryPoint(bmalloc::Scavenger*) + 9
6 com.apple.JavaScriptCore 0x00007fff3441ab67 void* std::__1::__thread_proxy<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct> >, void (*)(bmalloc::Scavenger*), bmalloc::Scavenger*> >(void*) + 39
7 libsystem_pthread.dylib 0x00007fff69d6a109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff69d65b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff69caf0fe __select + 10
1 org.R-project.R 0x0000000108dc0867 -[RController readThread:] + 647
2 com.apple.Foundation 0x00007fff322a9882 __NSThread__start__ + 1064
3 libsystem_pthread.dylib 0x00007fff69d6a109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff69d65b8b thread_start + 15
Thread 4:
0 libsystem_pthread.dylib 0x00007fff69d65b68 start_wqthread + 0
Thread 5:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff69ca6dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ca7170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2fc1f0b5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2fc1db82 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2fc1cffe CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2d03d5b4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff69d6a109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff69d65b8b thread_start + 15
Thread 6:
0 libsystem_pthread.dylib 0x00007fff69d65b68 start_wqthread + 0
Thread 7:
0 libsystem_pthread.dylib 0x00007fff69d65b68 start_wqthread + 0
Thread 8:
0 libsystem_kernel.dylib 0x00007fff69ca9756 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff69c2ceea nanosleep + 196
2 libsystem_c.dylib 0x00007fff69c2cde4 usleep + 53
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x00007fbfc8720d38 rbx: 0x0000000000000041 rcx: 0x0000000000000041 rdx: 0x0000000000000041
rdi: 0x0000000000000040 rsi: 0x0000000000000016 rbp: 0x00007ffee6e36570 rsp: 0x00007ffee6e36570
r8: 0x00000000000130a8 r9: 0x0000000000000000 r10: 0x000000011aa15a40 r11: 0x000000011aa15a38
r12: 0x000000011a857a10 r13: 0x00007fbfc8720d38 r14: 0x00007ffee6e365e0 r15: 0x00007fbfc9811260
rip: 0x00007fff69d5be52 rfl: 0x0000000000000202 cr2: 0x000000010919b730
Logical CPU: 0
Error Code: 0x020000b8
Trap Number: 133
Binary Images:
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0x7fff69d43000 - 0x7fff69d50ffb libsystem_networkextension.dylib (1095.100.29) <C9E988B2-6A18-35C0-9577-63201E9D6018> /usr/lib/system/libsystem_networkextension.dylib
0x7fff69d51000 - 0x7fff69d5aff7 libsystem_notify.dylib (241.100.2) <E405F84B-BD4F-3874-9755-CB3EC86E18D5> /usr/lib/system/libsystem_notify.dylib
0x7fff69d5b000 - 0x7fff69d63fef libsystem_platform.dylib (220.100.1) <6EF12F34-C33F-36BF-9A9A-2A35EA19EFE0> /usr/lib/system/libsystem_platform.dylib
0x7fff69d64000 - 0x7fff69d6efff libsystem_pthread.dylib (416.100.3) <A8514582-E000-3854-911A-0A73D2C79600> /usr/lib/system/libsystem_pthread.dylib
0x7fff69d6f000 - 0x7fff69d73ff3 libsystem_sandbox.dylib (1217.101.2) <E9D78CDE-FB67-32E7-BABC-9EFC23AA0DC6> /usr/lib/system/libsystem_sandbox.dylib
0x7fff69d74000 - 0x7fff69d76fff libsystem_secinit.dylib (62.100.2) <AAC639E5-7103-3366-A602-8FC6944E2C13> /usr/lib/system/libsystem_secinit.dylib
0x7fff69d77000 - 0x7fff69d7effb libsystem_symptoms.dylib (1238.100.26) <487B92DE-45F9-39F9-A478-89BBD478157D> /usr/lib/system/libsystem_symptoms.dylib
0x7fff69d7f000 - 0x7fff69d95ff2 libsystem_trace.dylib (1147.100.8) <BB90B1FD-8C09-3DF4-BD8B-9E4AEADFEA2B> /usr/lib/system/libsystem_trace.dylib
0x7fff69d97000 - 0x7fff69d9cff7 libunwind.dylib (35.4) <CC87C836-BE9D-334E-A0E6-0297D52E9D73> /usr/lib/system/libunwind.dylib
0x7fff69d9d000 - 0x7fff69dd2ffe libxpc.dylib (1738.100.39) <32B0E31E-9DA3-328B-A962-BC9591B93537> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 145511
thread_create: 0
thread_set_state: 33
VM Region Summary:
ReadOnly portion of Libraries: Total=805.0M resident=0K(0%) swapped_out_or_unallocated=805.0M(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 35.0M 3
CG image 1432K 16
CoreAnimation 66.8M 42
CoreGraphics 8K 1
CoreImage 612K 21
CoreUI image data 1376K 14
Foundation 24K 2
Image IO 368K 13
JS JIT generated code 1.0G 3
JS VM Isolated Heap 40K 2
Kernel Alloc Once 8K 1
MALLOC 476.0M 189
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 356K 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
SQLite page cache 64K 1
STACK GUARD 56.0M 9
Stack 12.1M 9
VM_ALLOCATE 8592K 52
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
WebKit Malloc 7272K 9
__DATA 45.5M 466
__DATA_CONST 45K 4
__FONT_DATA 4K 1
__LINKEDIT 397.2M 60
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 407.7M 437
__UNICODE 564K 1
mapped file 284.3M 51
shared memory 636K 14
=========== ======= =======
TOTAL 3.3G 1439
TOTAL, minus reserved VM space 2.8G 1439
Model: MacBookPro14,3, BootROM 205.0.0.0.0, 4 processors, Quad-Core Intel Core i7, 2.8 GHz, 16 GB, SMC 2.45f3
Graphics: kHW_IntelHDGraphics630Item, Intel HD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555Item, Radeon Pro 555, spdisplays_pcie_device, 2 GB
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x173), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1600.4)
Bluetooth: Version 7.0.4f6, 3 services, 18 devices, 1 incoming serial ports
Network Service: Apple USB Ethernet Adapter, Ethernet, en5
Network Service: USB 10/100/1000 LAN, Ethernet, en8
Network Service: Wi-Fi, AirPort, en0
Network Service: Thunderbolt Bridge, Ethernet, bridge0
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Does this help?
It does -- the error seems to indicate the crash is coming from the Rcpp bits included in reticulate
:
0 libsystem_platform.dylib 0x00007fff69d5be52 _platform_strlen + 18
1 libR.dylib 0x0000000108f7123e Rf_mkChar + 14 (envir.c:3803)
2 reticulate.so 0x000000011a81056a SEXPREC* exception_to_condition_template<Rcpp::exception>(Rcpp::exception const&, bool) + 266
3 reticulate.so 0x000000011a83666a _reticulate_py_call_impl.cold + 410
I'll see if I can learn more about what's going on...
Are you able to reproduce with a clean re-install of both Rcpp and reticulate? E.g.
install.packages("Rcpp")
install.packages("reticulate")
reticulate::import("sys")
It would also help if you installed reticulate
with debug symbols enabled so we could get a better backtrace.
@kevinushey thanks for this! A clean install of Rcpp
and reticulate
seems to have worked. No crashes so far!
In case I run into problems, how do I install reticulate
with debug symbols enabled?
And I am back, with yet another crash :(. Did all the steps as mentioned above, but again getting the same crash. Here's the crash report. Looks like something to do with libstd++6.dylib
Process: R [16693]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 3.6.3 GUI 1.70 El Capitan build (7735)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: R [16693]
User ID: 501
Date/Time: 2020-06-14 08:16:11.495 +0530
OS Version: Mac OS X 10.15.5 (19F101)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: FF048770-90AF-1F29-F5AE-44C54595DD90
Sleep/Wake UUID: D06B7CE2-83E4-435A-A965-1053760A3227
Time Awake Since Boot: 9900 seconds
Time Since Wake: 1600 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libstdc++.6.dylib 0x000000011aaf0a3a d_demangle_callback.constprop.0 + 26
Thread 1:
0 libsystem_pthread.dylib 0x00007fff704d3b68 start_wqthread + 0
Thread 2:: JavaScriptCore bmalloc scavenger
0 libsystem_kernel.dylib 0x00007fff70417882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff704d8425 _pthread_cond_wait + 698
2 libc++.1.dylib 0x00007fff6d5a7592 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 18
3 com.apple.JavaScriptCore 0x00007fff3aad3224 void std::__1::condition_variable_any::wait<std::__1::unique_lock<bmalloc::Mutex> >(std::__1::unique_lock<bmalloc::Mutex>&) + 84
4 com.apple.JavaScriptCore 0x00007fff3aad7a2b bmalloc::Scavenger::threadRunLoop() + 299
5 com.apple.JavaScriptCore 0x00007fff3aad75f9 bmalloc::Scavenger::threadEntryPoint(bmalloc::Scavenger*) + 9
6 com.apple.JavaScriptCore 0x00007fff3aad9cd7 void* std::__1::__thread_proxy<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct> >, void (*)(bmalloc::Scavenger*), bmalloc::Scavenger*> >(void*) + 39
7 libsystem_pthread.dylib 0x00007fff704d8109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff704d3b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff7041d0fe __select + 10
1 org.R-project.R 0x000000010e5fb867 -[RController readThread:] + 647
2 com.apple.Foundation 0x00007fff389677a2 __NSThread__start__ + 1064
3 libsystem_pthread.dylib 0x00007fff704d8109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff704d3b8b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff70414dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff70415170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff362d8f85 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff362d7a52 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff362d6ece CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff336ef144 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff704d8109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff704d3b8b thread_start + 15
Thread 5:
0 libsystem_pthread.dylib 0x00007fff704d3b68 start_wqthread + 0
Thread 6:
0 libsystem_kernel.dylib 0x00007fff70417756 __semwait_signal + 10
1 libsystem_c.dylib 0x00007fff7039aeea nanosleep + 196
2 libsystem_c.dylib 0x00007fff7039ade4 usleep + 53
3 reticulate.so 0x000000011ae66062 eventPollingWorker + 66 (event_loop.cpp:106)
4 reticulate.so 0x000000011ae66301 tthread::thread::wrapper_function(void*) + 17 (tinythread.h:874)
5 libsystem_pthread.dylib 0x00007fff704d8109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff704d3b8b thread_start + 15
Thread 7:
0 libsystem_pthread.dylib 0x00007fff704d3b68 start_wqthread + 0
Thread 8:
0 libsystem_pthread.dylib 0x00007fff704d3b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x000000011ae8e640 rbx: 0x00007ffee15f78cc rcx: 0x00007ffee15f78cc rdx: 0x00007ffee15f7870
rdi: 0x3970706352344e22 rsi: 0x000000011aae72c0 rbp: 0x00007ffee15f7860 rsp: 0x00007ffee15f7630
r8: 0x0000000000024951 r9: 0xffffffff00000000 r10: 0x00007fff965a6c00 r11: 0x00007ffdc6773b81
r12: 0x3970706352344e22 r13: 0x00007ffee15f7870 r14: 0x0000000000000001 r15: 0x00007ff05fc7c0f0
rip: 0x000000011aaf0a3a rfl: 0x0000000000000206 cr2: 0x000000010e9d3730
Logical CPU: 0
Error Code: 0x020000b8
Trap Number: 133
Binary Images:
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0x7fff6cde3000 - 0x7fff6cde5ff7 libDiagnosticMessagesClient.dylib (112) <27220E98-6CE2-33E3-BD48-3CC3CE4AA036> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6ce2b000 - 0x7fff6cfe2ffb libFosl_dynamic.dylib (100.4) <68038226-8CAA-36B5-B5D6-510F900B318D> /usr/lib/libFosl_dynamic.dylib
0x7fff6d009000 - 0x7fff6d00fff3 libIOReport.dylib (54) <E3A2148E-C5B2-30A8-ACD3-E081DD02BE90> /usr/lib/libIOReport.dylib
0x7fff6d0f1000 - 0x7fff6d0f8fff libMatch.1.dylib (36) <081FB6A9-0482-3697-A98B-6821FF476C6E> /usr/lib/libMatch.1.dylib
0x7fff6d127000 - 0x7fff6d147fff libMobileGestalt.dylib (826.120.5) <1977AD00-533A-31AA-8D74-EA6CB962F668> /usr/lib/libMobileGestalt.dylib
0x7fff6d1c7000 - 0x7fff6d2a4ff7 libSMC.dylib (20) <5FCE668E-C4D5-3E36-98B9-6DF720DCD886> /usr/lib/libSMC.dylib
0x7fff6d2b9000 - 0x7fff6d2bafff libSystem.B.dylib (1281.100.1) <B6FDA8A9-3D2B-3BD5-B5B0-57D311C0FF3D> /usr/lib/libSystem.B.dylib
0x7fff6d2bb000 - 0x7fff6d346ff7 libTelephonyUtilDynamic.dylib (5017.1) <4C11A09D-9B7E-3743-B9E6-39B4D466BAF1> /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff6d347000 - 0x7fff6d348fff libThaiTokenizer.dylib (3) <97DC10ED-3C11-3C89-B366-299A644035E7> /usr/lib/libThaiTokenizer.dylib
0x7fff6d360000 - 0x7fff6d376fff libapple_nghttp2.dylib (1.39.2) <B99D7150-D4E2-31A2-A594-36DA4B90D558> /usr/lib/libapple_nghttp2.dylib
0x7fff6d3ab000 - 0x7fff6d41dff7 libarchive.2.dylib (72.100.1) <20B70252-0C4B-3AFD-8C8D-F51921E9D324> /usr/lib/libarchive.2.dylib
0x7fff6d41e000 - 0x7fff6d4b7fe5 libate.dylib (3.0.1) <C4A5AE88-4E44-36FA-AD3E-0629AF9B94E0> /usr/lib/libate.dylib
0x7fff6d4bb000 - 0x7fff6d4bbff3 libauto.dylib (187) <85383E24-1592-36BC-BB39-308B7F1C826E> /usr/lib/libauto.dylib
0x7fff6d581000 - 0x7fff6d591ffb libbsm.0.dylib (60.100.1) <B2331E11-3CBB-3BCF-93A6-12627AE444D0> /usr/lib/libbsm.0.dylib
0x7fff6d592000 - 0x7fff6d59efff libbz2.1.0.dylib (44) <BF40E193-8856-39B7-98F8-7A17B328B1E9> /usr/lib/libbz2.1.0.dylib
0x7fff6d59f000 - 0x7fff6d5f1fff libc++.1.dylib (902.1) <AD0805FE-F98B-3E2F-B072-83782B22DAC9> /usr/lib/libc++.1.dylib
0x7fff6d5f2000 - 0x7fff6d607ffb libc++abi.dylib (902) <771E9263-E832-3985-9477-8F1B2D73B771> /usr/lib/libc++abi.dylib
0x7fff6d608000 - 0x7fff6d608fff libcharset.1.dylib (59) <FF23D4ED-A5AD-3592-9574-48486C7DF85B> /usr/lib/libcharset.1.dylib
0x7fff6d609000 - 0x7fff6d61afff libcmph.dylib (8) <296A51E6-9661-3AC2-A1C9-F1E3510F91AA> /usr/lib/libcmph.dylib
0x7fff6d61b000 - 0x7fff6d632fd7 libcompression.dylib (87) <21F37C2E-B9AA-38CE-9023-B763C8828AC6> /usr/lib/libcompression.dylib
0x7fff6d90c000 - 0x7fff6d922ff7 libcoretls.dylib (167) <9E5D1E0C-03F8-37B6-82A1-0D0597021CB8> /usr/lib/libcoretls.dylib
0x7fff6d923000 - 0x7fff6d924fff libcoretls_cfhelpers.dylib (167) <C23BE09B-85D1-3744-9E7B-E2B11ACD5442> /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6ddc7000 - 0x7fff6decbfef libcrypto.44.dylib (47.120.1) <B48C0D1A-CDCB-34E4-921E-00EBFF1208DE> /usr/lib/libcrypto.44.dylib
0x7fff6dece000 - 0x7fff6ded9fff libcsfde.dylib (551) <8FBB94EC-712C-3C0F-A8A9-88EE5F4679EF> /usr/lib/libcsfde.dylib
0x7fff6dee1000 - 0x7fff6df40ff7 libcups.2.dylib (483.6) <FFE8FE67-A6CC-3C38-A9D7-D411D7B562F1> /usr/lib/libcups.2.dylib
0x7fff6df42000 - 0x7fff6dfa7ff7 libcurl.4.dylib (118.120.2) <F2C246F3-460E-31A7-B900-2A9560533730> /usr/lib/libcurl.4.dylib
0x7fff6e04a000 - 0x7fff6e04afff libenergytrace.dylib (21) <DBF8BDEE-7229-3F06-AC10-A28DCC4243C0> /usr/lib/libenergytrace.dylib
0x7fff6e04b000 - 0x7fff6e063fff libexpat.1.dylib (19.60.2) <C9163264-BA81-3CC6-9B8C-48A9A0709DD5> /usr/lib/libexpat.1.dylib
0x7fff6e071000 - 0x7fff6e073fff libfakelink.dylib (149.1) <122F530F-F10E-3DD5-BBEA-91796BE583F3> /usr/lib/libfakelink.dylib
0x7fff6e082000 - 0x7fff6e087fff libgermantok.dylib (24) <DD279BF6-E906-30D3-A69E-DC797E95F147> /usr/lib/libgermantok.dylib
0x7fff6e088000 - 0x7fff6e091ff7 libheimdal-asn1.dylib (564.100.1) <68FA1BE5-8FFC-3345-8980-8D8629EBA451> /usr/lib/libheimdal-asn1.dylib
0x7fff6e092000 - 0x7fff6e182fff libiconv.2.dylib (59) <F58FED71-6CCA-30E8-9A51-13E9B46E568D> /usr/lib/libiconv.2.dylib
0x7fff6e183000 - 0x7fff6e3dafff libicucore.A.dylib (64260.0.1) <7B9204AC-EA14-3FF3-B6B9-4C85B37EED79> /usr/lib/libicucore.A.dylib
0x7fff6e3f4000 - 0x7fff6e3f5fff liblangid.dylib (133) <36581D30-1C7B-3A58-AA07-36237BD75E0E> /usr/lib/liblangid.dylib
0x7fff6e3f6000 - 0x7fff6e40eff3 liblzma.5.dylib (16) <4DB30730-DBD1-3503-957A-D604049B98F9> /usr/lib/liblzma.5.dylib
0x7fff6e426000 - 0x7fff6e4cdff7 libmecab.dylib (883.11) <66AD729B-2BCC-3347-B9B3-FD88570E884D> /usr/lib/libmecab.dylib
0x7fff6e4ce000 - 0x7fff6e730ff1 libmecabra.dylib (883.11) <2AE744D2-AC95-3720-8E66-4F9C7A79384C> /usr/lib/libmecabra.dylib
0x7fff6ea9d000 - 0x7fff6eaccfff libncurses.5.4.dylib (57) <B0B09D08-A7C9-38E9-8BF4-E4F4882F93A6> /usr/lib/libncurses.5.4.dylib
0x7fff6ebfc000 - 0x7fff6f078ff5 libnetwork.dylib (1880.120.4) <715FB943-BA01-351C-BEA6-121970472985> /usr/lib/libnetwork.dylib
0x7fff6f079000 - 0x7fff6f090fff libnetworkextension.dylib (1095.120.6) <782E43F6-1FB9-3A5F-AF24-AC21A63C1A37> /usr/lib/libnetworkextension.dylib
0x7fff6f119000 - 0x7fff6f14cfde libobjc.A.dylib (787.1) <CA836D3E-4595-33F1-B70C-7E39A3FBBE16> /usr/lib/libobjc.A.dylib
0x7fff6f14d000 - 0x7fff6f14eff7 libodfde.dylib (26) <2DDA61BF-E92A-3463-B1C4-D59E40D34D34> /usr/lib/libodfde.dylib
0x7fff6f15f000 - 0x7fff6f163fff libpam.2.dylib (25.100.1) <732E8D8E-C630-3EC2-B6C3-A1564E3B68B8> /usr/lib/libpam.2.dylib
0x7fff6f166000 - 0x7fff6f19cff7 libpcap.A.dylib (89.120.1) <CF2ADF15-2D44-3A35-94B4-DD24052F9B23> /usr/lib/libpcap.A.dylib
0x7fff6f1dc000 - 0x7fff6f1eaff9 libperfcheck.dylib (37.100.2) <4B1B7D59-2A8B-3E32-AAE6-B428252A5204> /usr/lib/libperfcheck.dylib
0x7fff6f220000 - 0x7fff6f238fff libresolv.9.dylib (67.40.1) <B0F5D204-7EF2-3B0B-90EF-BB4D196FCC62> /usr/lib/libresolv.9.dylib
0x7fff6f23a000 - 0x7fff6f27eff7 libsandbox.1.dylib (1217.120.7) <728BC15F-9A6C-3634-9427-60C01CB5A5D6> /usr/lib/libsandbox.1.dylib
0x7fff6f27f000 - 0x7fff6f291ff7 libsasl2.2.dylib (213.120.1) <E6375405-168D-3B75-8042-C8B329D01AB9> /usr/lib/libsasl2.2.dylib
0x7fff6f292000 - 0x7fff6f293ff7 libspindump.dylib (281.3) <0C3A8B48-DC31-3F61-B4CC-746157042D0E> /usr/lib/libspindump.dylib
0x7fff6f294000 - 0x7fff6f47eff7 libsqlite3.dylib (308.5) <AF518115-4AD1-39F2-9B82-E2640E2221E1> /usr/lib/libsqlite3.dylib
0x7fff6f572000 - 0x7fff6f59fffb libssl.46.dylib (47.120.1) <6209494A-4AAD-344E-992C-03ACD2D4C402> /usr/lib/libssl.46.dylib
0x7fff6f6cf000 - 0x7fff6f6d2ffb libutil.dylib (57) <D33B63D2-ADC2-38BD-B8F2-24056C41E07B> /usr/lib/libutil.dylib
0x7fff6f6d3000 - 0x7fff6f6e0ff7 libxar.1.dylib (425.2) <943A4CBB-331B-3A04-A11F-A2301189D40B> /usr/lib/libxar.1.dylib
0x7fff6f6e6000 - 0x7fff6f7c8ff7 libxml2.2.dylib (33.3) <262EF7C6-7D83-3C01-863F-36E97F5ACD34> /usr/lib/libxml2.2.dylib
0x7fff6f7cc000 - 0x7fff6f7f4fff libxslt.1.dylib (16.9) <86FE4382-BD77-3C19-A678-11EBCD70685A> /usr/lib/libxslt.1.dylib
0x7fff6f7f5000 - 0x7fff6f807ff3 libz.1.dylib (76) <DB120508-3BED-37A8-B439-5235EAB4618A> /usr/lib/libz.1.dylib
0x7fff700b5000 - 0x7fff700baff3 libcache.dylib (83) <A5ECC751-A681-30D8-B33C-D192C15D25C8> /usr/lib/system/libcache.dylib
0x7fff700bb000 - 0x7fff700c6fff libcommonCrypto.dylib (60165.120.1) <C321A74A-AA91-3785-BEBF-BEDC6975026C> /usr/lib/system/libcommonCrypto.dylib
0x7fff700c7000 - 0x7fff700cefff libcompiler_rt.dylib (101.2) <652A6012-7E5C-3F4F-9438-86BC094526F3> /usr/lib/system/libcompiler_rt.dylib
0x7fff700cf000 - 0x7fff700d8ff7 libcopyfile.dylib (166.40.1) <40113A69-A81C-3397-ADC6-1D16B9A22C3E> /usr/lib/system/libcopyfile.dylib
0x7fff700d9000 - 0x7fff7016bfe3 libcorecrypto.dylib (866.120.3) <5E4B0E50-24DD-3E04-9374-EDA9FFD6257B> /usr/lib/system/libcorecrypto.dylib
0x7fff70278000 - 0x7fff702b8ff0 libdispatch.dylib (1173.100.2) <201EDBF3-0B36-31BA-A7CB-443CE35C05D4> /usr/lib/system/libdispatch.dylib
0x7fff702b9000 - 0x7fff702effff libdyld.dylib (750.5) <7E711A46-5E4D-393C-AEA6-440E2A5CCD0C> /usr/lib/system/libdyld.dylib
0x7fff702f0000 - 0x7fff702f0ffb libkeymgr.dylib (30) <52662CAA-DB1F-30A3-BE13-D6274B1A6D7B> /usr/lib/system/libkeymgr.dylib
0x7fff702f1000 - 0x7fff702fdff3 libkxld.dylib (6153.121.2) <5EBB4886-C7B6-31D6-AA63-D861B2D58FCE> /usr/lib/system/libkxld.dylib
0x7fff702fe000 - 0x7fff702feff7 liblaunch.dylib (1738.120.8) <07CF647B-F9DC-3907-AD98-2F85FCB34A72> /usr/lib/system/liblaunch.dylib
0x7fff702ff000 - 0x7fff70304ff7 libmacho.dylib (959.0.1) <D91DFF00-E22F-3796-8A1C-4C1F5F8FA03C> /usr/lib/system/libmacho.dylib
0x7fff70305000 - 0x7fff70307ff3 libquarantine.dylib (110.40.3) <D3B7D02C-7646-3FB4-8529-B36DCC2419EA> /usr/lib/system/libquarantine.dylib
0x7fff70308000 - 0x7fff70309ff7 libremovefile.dylib (48) <B5E88D9B-C2BE-3496-BBB2-C996317E18A3> /usr/lib/system/libremovefile.dylib
0x7fff7030a000 - 0x7fff70321ff3 libsystem_asl.dylib (377.60.2) <1170348D-2491-33F1-AA79-E2A05B4A287C> /usr/lib/system/libsystem_asl.dylib
0x7fff70322000 - 0x7fff70322ff7 libsystem_blocks.dylib (74) <7AFBCAA6-81BE-36C3-8DB0-AAE0A4ACE4C5> /usr/lib/system/libsystem_blocks.dylib
0x7fff70323000 - 0x7fff703aafff libsystem_c.dylib (1353.100.2) <935DDCE9-4ED0-3F79-A05A-A123DDE399CC> /usr/lib/system/libsystem_c.dylib
0x7fff703ab000 - 0x7fff703aeffb libsystem_configuration.dylib (1061.120.2) <EA9BC2B1-5001-3463-9FAF-39FF61CAC87C> /usr/lib/system/libsystem_configuration.dylib
0x7fff703af000 - 0x7fff703b2fff libsystem_coreservices.dylib (114) <3D0A3AA8-8415-37B2-AAE3-66C03BCE8B55> /usr/lib/system/libsystem_coreservices.dylib
0x7fff703b3000 - 0x7fff703bbfff libsystem_darwin.dylib (1353.100.2) <6EEC9975-EE3B-3C95-AA5B-030FD10587BC> /usr/lib/system/libsystem_darwin.dylib
0x7fff703bc000 - 0x7fff703c3fff libsystem_dnssd.dylib (1096.100.3) <0115092A-E61B-317D-8670-41C7C34B1A82> /usr/lib/system/libsystem_dnssd.dylib
0x7fff703c4000 - 0x7fff703c5ffb libsystem_featureflags.dylib (17) <AFDB5095-0472-34AC-BA7E-497921BF030A> /usr/lib/system/libsystem_featureflags.dylib
0x7fff703c6000 - 0x7fff70413ff7 libsystem_info.dylib (538) <851693E9-C079-3547-AD41-353F8C248BE8> /usr/lib/system/libsystem_info.dylib
0x7fff70414000 - 0x7fff70440ff7 libsystem_kernel.dylib (6153.121.2) <9F9902C9-A46F-3CA9-B7F9-5CCFE98FBF75> /usr/lib/system/libsystem_kernel.dylib
0x7fff70441000 - 0x7fff70488fff libsystem_m.dylib (3178) <436CFF76-6A99-36F2-A3B6-8D017396A050> /usr/lib/system/libsystem_m.dylib
0x7fff70489000 - 0x7fff704b0fff libsystem_malloc.dylib (283.100.6) <D4BA7DF2-57AC-33B0-B948-A688EE43C799> /usr/lib/system/libsystem_malloc.dylib
0x7fff704b1000 - 0x7fff704beffb libsystem_networkextension.dylib (1095.120.6) <6DE86DB0-8CD2-361E-BD6A-A34282B47847> /usr/lib/system/libsystem_networkextension.dylib
0x7fff704bf000 - 0x7fff704c8ff7 libsystem_notify.dylib (241.100.2) <7E9E2FC8-DF26-340C-B196-B81B11850C46> /usr/lib/system/libsystem_notify.dylib
0x7fff704c9000 - 0x7fff704d1fef libsystem_platform.dylib (220.100.1) <736920EA-6AE0-3B1B-BBDA-7DCDF0C229DF> /usr/lib/system/libsystem_platform.dylib
0x7fff704d2000 - 0x7fff704dcfff libsystem_pthread.dylib (416.100.3) <77488669-19A3-3993-AD65-CA5377E2475A> /usr/lib/system/libsystem_pthread.dylib
0x7fff704dd000 - 0x7fff704e1ff3 libsystem_sandbox.dylib (1217.120.7) <20C93D69-6452-3C82-9521-8AE54345C66F> /usr/lib/system/libsystem_sandbox.dylib
0x7fff704e2000 - 0x7fff704e4fff libsystem_secinit.dylib (62.100.2) <E851113D-D5B1-3FB0-9D29-9C7647A71961> /usr/lib/system/libsystem_secinit.dylib
0x7fff704e5000 - 0x7fff704ecffb libsystem_symptoms.dylib (1238.120.1) <25C3866B-004E-3621-9CD3-B1E9C4D887EB> /usr/lib/system/libsystem_symptoms.dylib
0x7fff704ed000 - 0x7fff70503ff2 libsystem_trace.dylib (1147.120) <A1ED1D3A-5FAD-3559-A1D6-1BE4E1C5756A> /usr/lib/system/libsystem_trace.dylib
0x7fff70505000 - 0x7fff7050aff7 libunwind.dylib (35.4) <253A12E2-F88F-3838-A666-C5306F833CB8> /usr/lib/system/libunwind.dylib
0x7fff7050b000 - 0x7fff70540ffe libxpc.dylib (1738.120.8) <68D433B6-DCFF-385D-8620-F847FB7D4A5A> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 37546
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=973.6M resident=0K(0%) swapped_out_or_unallocated=973.6M(100%)
Writable regions: Total=1.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 35.0M 3
CG image 1380K 11
CoreAnimation 70.2M 31
CoreGraphics 8K 1
CoreImage 320K 13
CoreUI image data 1076K 11
Foundation 28K 2
Image IO 384K 15
JS JIT generated code 1.0G 3
JS VM Isolated Heap 40K 2
Kernel Alloc Once 8K 1
MALLOC 458.9M 290
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 356K 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
Memory Tag 251 24K 2
SQLite page cache 64K 1
STACK GUARD 56.0M 9
Stack 12.1M 9
VM_ALLOCATE 144K 19
WebKit Malloc 7272K 9
__DATA 50.4M 581
__DATA_CONST 85K 5
__FONT_DATA 4K 1
__LINKEDIT 417.7M 136
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 555.9M 513
__UNICODE 564K 1
mapped file 284.7M 51
shared memory 636K 14
=========== ======= =======
TOTAL 3.3G 1752
TOTAL, minus reserved VM space 2.9G 1752
Model: MacBookPro14,3, BootROM 207.0.0.0.0, 4 processors, Quad-Core Intel Core i7, 2.8 GHz, 16 GB, SMC 2.45f4
Graphics: kHW_IntelHDGraphics630Item, Intel HD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555Item, Radeon Pro 555, spdisplays_pcie_device, 2 GB
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x173), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1610.1)
Bluetooth: Version 7.0.5f6, 3 services, 18 devices, 1 incoming serial ports
Network Service: Apple USB Ethernet Adapter, Ethernet, en5
Network Service: USB 10/100/1000 LAN, Ethernet, en8
Network Service: Wi-Fi, AirPort, en0
Network Service: Thunderbolt Bridge, Ethernet, bridge0
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
I have tried reinstalling reticulate
both from CRAN as well as the dev version. No joy.
The fact that the crash is occurring in libstdc++.6.dylib
is weird, since R on macOS typically uses libc++
(since things are compiled by clang instead of gcc).
Any idea what might be going on there?
Drawing a complete blank here. Open to suggestions.
Somehow putting the code as Rstudio Job fixes this issue for me:
rstudioapi::jobRunScript("job_keras.R", workingDir = ".")
After hearing so many good things about how people are using Python and R together, I tried giving this another shot. No joy again :(
Here's my latest session info:
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 digest_0.6.27 later_1.1.0.1 mime_0.9 R6_2.5.0 xtable_1.8-4 magrittr_2.0.1
[8] evaluate_0.14 rlang_0.4.9 promises_1.1.1 rmarkdown_2.5 tools_4.0.2 shiny_1.5.0 fastmap_1.0.1
[15] httpuv_1.5.4 xfun_0.19 yaml_2.2.1 compiler_4.0.2 htmltools_0.5.0 knitr_1.30
And here's the latest crash report:
Process: R [9133]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R for R 4.0.2 GUI 1.72 Catalina build (7847)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: R [9133]
User ID: 501
Date/Time: 2020-12-12 17:50:12.725 +0530
OS Version: Mac OS X 10.15.7 (19H15)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: FF048770-90AF-1F29-F5AE-44C54595DD90
Sleep/Wake UUID: 17203DA1-788D-4E33-9C01-483ED7E11FC6
Time Awake Since Boot: 28000 seconds
Time Since Wake: 9200 seconds
System Integrity Protection: enabled
Crashed Thread: Unknown
Exception Type: EXC_BAD_ACCESS (Code Signature Invalid)
Exception Codes: 0x0000000000000032, 0x000000010c5ff000
Exception Note: EXC_CORPSE_NOTIFY
Termination Reason: Namespace CODESIGNING, Code 0x2
kernel messages:
VM Regions Near 0x10c5ff000:
VM_ALLOCATE 000000010c5fe000-000000010c5ff000 [ 4K] rwx/rwx SM=PRV
--> mapped file 000000010c5ff000-000000010c600000 [ 4K] r--/r-x SM=PRV
CoreAnimation 000000010c600000-000000010c646000 [ 280K] rw-/rwx SM=PRV
Application Specific Information:
dyld: in dlopen()
/Users/dhirajkhanna/opt/anaconda3/lib/libmkl_intel_thread.dylib
Thread 0:
0 libsystem_pthread.dylib 0x00007fff71b8cb68 start_wqthread + 0
Thread 1:: JavaScriptCore bmalloc scavenger
0 libsystem_kernel.dylib 0x00007fff71ad0882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff71b91425 _pthread_cond_wait + 698
2 libc++.1.dylib 0x00007fff6ec5f592 std::__1::condition_variable::wait(std::__1::unique_lock<std::__1::mutex>&) + 18
3 com.apple.JavaScriptCore 0x00007fff3c11a274 void std::__1::condition_variable_any::wait<std::__1::unique_lock<bmalloc::Mutex> >(std::__1::unique_lock<bmalloc::Mutex>&) + 84
4 com.apple.JavaScriptCore 0x00007fff3c11ea7b bmalloc::Scavenger::threadRunLoop() + 299
5 com.apple.JavaScriptCore 0x00007fff3c11e649 bmalloc::Scavenger::threadEntryPoint(bmalloc::Scavenger*) + 9
6 com.apple.JavaScriptCore 0x00007fff3c120d27 void* std::__1::__thread_proxy<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct, std::__1::default_delete<std::__1::__thread_struct> >, void (*)(bmalloc::Scavenger*), bmalloc::Scavenger*> >(void*) + 39
7 libsystem_pthread.dylib 0x00007fff71b91109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff71b8cb8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff71ad60fe __select + 10
1 org.R-project.R 0x00000001078e3960 -[RController readThread:] + 512
2 com.apple.Foundation 0x00007fff39fae7a2 __NSThread__start__ + 1064
3 libsystem_pthread.dylib 0x00007fff71b91109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff71b8cb8b thread_start + 15
Thread 3:: Dispatch queue: com.apple.root.default-qos.overcommit
0 libdispatch.dylib 0x00007fff7194e51f _dispatch_kq_drain + 116
1 libdispatch.dylib 0x00007fff7194e455 _dispatch_event_loop_drain + 297
2 libdispatch.dylib 0x00007fff71945460 _dispatch_source_invoke + 1990
3 libdispatch.dylib 0x00007fff71942c09 _dispatch_workloop_worker_thread + 596
4 libsystem_pthread.dylib 0x00007fff71b8da3d _pthread_wqthread + 290
5 libsystem_pthread.dylib 0x00007fff71b8cb77 start_wqthread + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff71acddfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71ace170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3791cef5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff3791b9c2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff3791ae3e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff34d2e954 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff71b91109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff71b8cb8b thread_start + 15
Thread 5:
0 libsystem_pthread.dylib 0x00007fff71b8cb68 start_wqthread + 0
Unknown thread crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010c5ff000 rcx: 0x0000000000000000 rdx: 0x0000000000000818
rdi: 0x000000010c5ff000 rsi: 0x00007ffee8308630 rbp: 0x00007ffee8308010 rsp: 0x00007ffee8308010
r8: 0x000000000000000f r9: 0x0000000000000000 r10: 0x0000000000000001 r11: 0x0000000000000202
r12: 0x0000000000000000 r13: 0x000000000000000f r14: 0x0000000000000818 r15: 0x00006000036ad5c0
rip: 0x00000001178be450 rfl: 0x0000000000010246 cr2: 0x000000010c5ff000
Logical CPU: 0
Error Code: 0x00000004 (no mapping for user data read)
Trap Number: 14
Binary Images:
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0x7fff6b8ae000 - 0x7fff6b8b0ff3 com.apple.loginsupport (1.0 - 1) <12F77885-27DC-3837-9CE9-A25EBA75F833> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff6b8b1000 - 0x7fff6b8c4ffd com.apple.login (3.0 - 3.0) <C68367BA-2225-31DD-B2D8-16AC0A44421F> /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff6b8f6000 - 0x7fff6b902ffd com.apple.perfdata (1.0 - 51.100.6) <21760CFD-62FF-3466-B3AD-191D02411DA0> /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata
0x7fff6e2a2000 - 0x7fff6e2b7ffe libAccessibility.dylib (2790.70) <3F824859-2E9B-3772-A475-73E4F88A15C2> /usr/lib/libAccessibility.dylib
0x7fff6e387000 - 0x7fff6e393ff9 libAudioStatistics.dylib (1104.93) <42CAC6A2-BCC3-391B-B1C1-D0AC69E99CF4> /usr/lib/libAudioStatistics.dylib
0x7fff6e394000 - 0x7fff6e3c7ffa libAudioToolboxUtility.dylib (1104.93) <A7249C4C-6C0A-3C14-BA27-DC966F6CC6A0> /usr/lib/libAudioToolboxUtility.dylib
0x7fff6e3ce000 - 0x7fff6e402fff libCRFSuite.dylib (48) <5E5DE3CB-30DD-34DC-AEF8-FE8536A85E96> /usr/lib/libCRFSuite.dylib
0x7fff6e405000 - 0x7fff6e40ffff libChineseTokenizer.dylib (34) <7F0DA183-1796-315A-B44A-2C234C7C50BE> /usr/lib/libChineseTokenizer.dylib
0x7fff6e410000 - 0x7fff6e498fff libCoreStorage.dylib (551) <A457B0FE-D77F-30AA-99A4-70F6A98DFE59> /usr/lib/libCoreStorage.dylib
0x7fff6e49b000 - 0x7fff6e49dff7 libDiagnosticMessagesClient.dylib (112) <C94F3B7B-1854-38EB-9778-834501C53B3F> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6e4e3000 - 0x7fff6e69affb libFosl_dynamic.dylib (100.4) <737573B2-190A-3BA1-8220-807AD0A2CE5E> /usr/lib/libFosl_dynamic.dylib
0x7fff6e6c1000 - 0x7fff6e6c7ff3 libIOReport.dylib (54) <75D177C4-BAD7-3285-B8E1-3019F49B3178> /usr/lib/libIOReport.dylib
0x7fff6e7a9000 - 0x7fff6e7b0fff libMatch.1.dylib (36) <5C6F3971-9D9E-3630-BDB6-60BFC5A665E0> /usr/lib/libMatch.1.dylib
0x7fff6e7df000 - 0x7fff6e7ffff7 libMobileGestalt.dylib (826.140.5) <2BE94E6A-FA61-312F-84A1-F764D71B7E39> /usr/lib/libMobileGestalt.dylib
0x7fff6e87f000 - 0x7fff6e95cff7 libSMC.dylib (20) <5C9C17F2-1E6F-3A19-A440-86F74D82284F> /usr/lib/libSMC.dylib
0x7fff6e971000 - 0x7fff6e972fff libSystem.B.dylib (1281.100.1) <0A6C8BA1-30FD-3D10-83FD-FF29E221AFFE> /usr/lib/libSystem.B.dylib
0x7fff6e973000 - 0x7fff6e9feff7 libTelephonyUtilDynamic.dylib (5017.1) <174030B2-E35F-3F17-A9EF-DF8631F30CCF> /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff6e9ff000 - 0x7fff6ea00fff libThaiTokenizer.dylib (3) <4F4ADE99-0D09-3223-B7C0-C407AB6DE8DC> /usr/lib/libThaiTokenizer.dylib
0x7fff6ea18000 - 0x7fff6ea2efff libapple_nghttp2.dylib (1.39.2) <07FEC48A-87CF-32A3-8194-FA70B361713A> /usr/lib/libapple_nghttp2.dylib
0x7fff6ea63000 - 0x7fff6ead5ff7 libarchive.2.dylib (72.140.1) <AC311FBA-F2DD-3595-AA76-769F912942B8> /usr/lib/libarchive.2.dylib
0x7fff6ead6000 - 0x7fff6eb6ffe5 libate.dylib (3.0.1) <76EA60FB-748C-313F-8951-B076540BEA97> /usr/lib/libate.dylib
0x7fff6eb73000 - 0x7fff6eb73ff3 libauto.dylib (187) <B6124448-7690-34AE-8939-ED84AAC630CE> /usr/lib/libauto.dylib
0x7fff6ec39000 - 0x7fff6ec49ffb libbsm.0.dylib (60.100.1) <00BFFB9A-2FFE-3C24-896A-251BC61917FD> /usr/lib/libbsm.0.dylib
0x7fff6ec4a000 - 0x7fff6ec56fff libbz2.1.0.dylib (44) <14CC4988-B6D4-3879-AFC2-9A0DDC6388DE> /usr/lib/libbz2.1.0.dylib
0x7fff6ec57000 - 0x7fff6eca9fff libc++.1.dylib (902.1) <59A8239F-C28A-3B59-B8FA-11340DC85EDC> /usr/lib/libc++.1.dylib
0x7fff6ecaa000 - 0x7fff6ecbfffb libc++abi.dylib (902) <E692F14F-C65E-303B-9921-BB7E97D77855> /usr/lib/libc++abi.dylib
0x7fff6ecc0000 - 0x7fff6ecc0fff libcharset.1.dylib (59) <72447768-9244-39AB-8E79-2FA14EC0AD33> /usr/lib/libcharset.1.dylib
0x7fff6ecc1000 - 0x7fff6ecd2fff libcmph.dylib (8) <E72A20DB-2E86-378D-A237-EB9A1370F989> /usr/lib/libcmph.dylib
0x7fff6ecd3000 - 0x7fff6eceafd7 libcompression.dylib (87) <64C91066-586D-38C0-A2F3-3E60A940F859> /usr/lib/libcompression.dylib
0x7fff6efc4000 - 0x7fff6efdaff7 libcoretls.dylib (167) <770A5B96-936E-34E3-B006-B1CEC299B5A5> /usr/lib/libcoretls.dylib
0x7fff6efdb000 - 0x7fff6efdcfff libcoretls_cfhelpers.dylib (167) <940BF370-FD0C-30A8-AA05-FF48DA44FA4C> /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6f47f000 - 0x7fff6f583fef libcrypto.44.dylib (47.140.1) <CB6B188A-1ADC-3C5D-AFFC-2ACD86E235EE> /usr/lib/libcrypto.44.dylib
0x7fff6f586000 - 0x7fff6f591fff libcsfde.dylib (551) <CEE22AEF-4E77-36B1-B007-00303819965F> /usr/lib/libcsfde.dylib
0x7fff6f599000 - 0x7fff6f5f8ff7 libcups.2.dylib (483.6) <C88D78FE-D238-376C-B16A-39270E39A79D> /usr/lib/libcups.2.dylib
0x7fff6f5fa000 - 0x7fff6f65fff7 libcurl.4.dylib (118.120.2) <28809E22-6EF2-3AC7-9501-D77FB6FC5FBD> /usr/lib/libcurl.4.dylib
0x7fff6f702000 - 0x7fff6f702fff libenergytrace.dylib (21) <162DFCC0-8F48-3DD0-914F-FA8653E27B26> /usr/lib/libenergytrace.dylib
0x7fff6f703000 - 0x7fff6f71bfff libexpat.1.dylib (19.60.2) <FED7C38B-92D8-342D-AED7-871B12D1F7E7> /usr/lib/libexpat.1.dylib
0x7fff6f729000 - 0x7fff6f72bfff libfakelink.dylib (149.1) <36146CB2-E6A5-37BB-9EE8-1B4034D8F3AD> /usr/lib/libfakelink.dylib
0x7fff6f73a000 - 0x7fff6f73ffff libgermantok.dylib (24) <D2AE5AC0-EDCE-3216-B8C9-CF59292A545F> /usr/lib/libgermantok.dylib
0x7fff6f740000 - 0x7fff6f749ff7 libheimdal-asn1.dylib (564.140.1) <0AC6FB62-2B0F-3E93-A931-E4DC4B1D757A> /usr/lib/libheimdal-asn1.dylib
0x7fff6f74a000 - 0x7fff6f83afff libiconv.2.dylib (59) <18311A67-E4EF-3CC7-95B3-C0EDEE3A282F> /usr/lib/libiconv.2.dylib
0x7fff6f83b000 - 0x7fff6fa92fff libicucore.A.dylib (64260.0.1) <8AC2CB07-E7E0-340D-A849-186FA1F27251> /usr/lib/libicucore.A.dylib
0x7fff6faac000 - 0x7fff6faadfff liblangid.dylib (133) <30CFC08C-EF36-3CF5-8AEA-C1CB070306B7> /usr/lib/liblangid.dylib
0x7fff6faae000 - 0x7fff6fac6ff3 liblzma.5.dylib (16) <C131EF18-2CDD-3271-8A30-A8760D4FE166> /usr/lib/liblzma.5.dylib
0x7fff6fade000 - 0x7fff6fb85ff7 libmecab.dylib (883.11) <0D5BFD01-D4A7-3C8D-AA69-C329C1A69792> /usr/lib/libmecab.dylib
0x7fff6fb86000 - 0x7fff6fde8ff1 libmecabra.dylib (883.11) <E31DE74D-1B88-377F-ACD3-D789D29C3AE7> /usr/lib/libmecabra.dylib
0x7fff70155000 - 0x7fff70184fff libncurses.5.4.dylib (57) <995DFEEA-40F3-377F-B73D-D02AC59D591F> /usr/lib/libncurses.5.4.dylib
0x7fff702b4000 - 0x7fff70730ff5 libnetwork.dylib (1880.120.4) <BA294A54-F309-398D-B308-F97032AFF555> /usr/lib/libnetwork.dylib
0x7fff70731000 - 0x7fff70748fff libnetworkextension.dylib (1095.140.2) <D0E8454C-33A9-3F96-B3A0-EDB12C32283A> /usr/lib/libnetworkextension.dylib
0x7fff707d1000 - 0x7fff70804fde libobjc.A.dylib (787.1) <6DF81160-5E7F-3E31-AA1E-C875E3B98AF6> /usr/lib/libobjc.A.dylib
0x7fff70805000 - 0x7fff70806ff7 libodfde.dylib (26) <33F49412-5106-35B8-AA60-5A497C3967E6> /usr/lib/libodfde.dylib
0x7fff70817000 - 0x7fff7081bfff libpam.2.dylib (25.100.1) <0502F395-8EE6-3D2A-9239-06FD5622E19E> /usr/lib/libpam.2.dylib
0x7fff7081e000 - 0x7fff70854ff7 libpcap.A.dylib (89.120.1) <A76EC076-A8EA-354C-B95F-7AB1EAFBCC65> /usr/lib/libpcap.A.dylib
0x7fff70894000 - 0x7fff708a2ff9 libperfcheck.dylib (37.100.2) <9D9C4879-8A80-34C4-B0D2-BE341FD6D321> /usr/lib/libperfcheck.dylib
0x7fff708d8000 - 0x7fff708f0fff libresolv.9.dylib (67.40.1) <C57EDFEF-D36A-310B-8D14-8C68A625B1E8> /usr/lib/libresolv.9.dylib
0x7fff708f2000 - 0x7fff70936ff7 libsandbox.1.dylib (1217.141.2) <E8BA5E84-66AF-3995-8F8E-DDC93B0A88E1> /usr/lib/libsandbox.1.dylib
0x7fff70937000 - 0x7fff70949ff7 libsasl2.2.dylib (213.120.1) <E7573AC1-83FD-305A-8FB8-03145BDA286B> /usr/lib/libsasl2.2.dylib
0x7fff7094a000 - 0x7fff7094bff7 libspindump.dylib (281.3) <AE8C1AE9-5CBC-332F-BBE8-370A2A19FED6> /usr/lib/libspindump.dylib
0x7fff7094c000 - 0x7fff70b36ff7 libsqlite3.dylib (308.5) <35A2BD9F-4E33-30DE-A994-4AB585AC3AFE> /usr/lib/libsqlite3.dylib
0x7fff70c2a000 - 0x7fff70c57ffb libssl.46.dylib (47.140.1) <06932872-13DA-33E3-8C28-7B49FC582039> /usr/lib/libssl.46.dylib
0x7fff70d87000 - 0x7fff70d8affb libutil.dylib (57) <F01467F6-23A7-37EE-A170-33CE1577B41D> /usr/lib/libutil.dylib
0x7fff70d8b000 - 0x7fff70d98ff7 libxar.1.dylib (425.2) <EE964412-9E25-30B3-BCC0-CCEFBCC8094B> /usr/lib/libxar.1.dylib
0x7fff70d9e000 - 0x7fff70e80fff libxml2.2.dylib (33.5) <A579D158-2E09-316C-872E-DD9D93401B2F> /usr/lib/libxml2.2.dylib
0x7fff70e84000 - 0x7fff70eacfff libxslt.1.dylib (16.9) <34A45627-DA5B-37D2-9609-65B425E0010A> /usr/lib/libxslt.1.dylib
0x7fff70ead000 - 0x7fff70ebfff3 libz.1.dylib (76) <793D9643-CD83-3AAC-8B96-88D548FAB620> /usr/lib/libz.1.dylib
0x7fff7176e000 - 0x7fff71773ff3 libcache.dylib (83) <AF488D13-9E89-35E0-B078-BE37CC5B8586> /usr/lib/system/libcache.dylib
0x7fff71774000 - 0x7fff7177ffff libcommonCrypto.dylib (60165.120.1) <C7912BE5-993E-3581-B2A0-6AABDC8C5562> /usr/lib/system/libcommonCrypto.dylib
0x7fff71780000 - 0x7fff71787fff libcompiler_rt.dylib (101.2) <49B8F644-5705-3F16-BBE0-6FFF9B17C36E> /usr/lib/system/libcompiler_rt.dylib
0x7fff71788000 - 0x7fff71791ff7 libcopyfile.dylib (166.40.1) <3C481225-21E7-370A-A30E-0CCFDD64A92C> /usr/lib/system/libcopyfile.dylib
0x7fff71792000 - 0x7fff71824fdb libcorecrypto.dylib (866.140.1) <60567BF8-80FA-359A-B2F3-A3BAEFB288FD> /usr/lib/system/libcorecrypto.dylib
0x7fff71931000 - 0x7fff71971ff0 libdispatch.dylib (1173.100.2) <CD9C059C-91D9-30E8-8926-5B9CD0D5D4F5> /usr/lib/system/libdispatch.dylib
0x7fff71972000 - 0x7fff719a8fff libdyld.dylib (750.6) <789A18C2-8AC7-3C88-813D-CD674376585D> /usr/lib/system/libdyld.dylib
0x7fff719a9000 - 0x7fff719a9ffb libkeymgr.dylib (30) <DB3337BE-01CA-3425-BD0C-87774FC0CDC0> /usr/lib/system/libkeymgr.dylib
0x7fff719aa000 - 0x7fff719b6ff3 libkxld.dylib (6153.141.2.2) <30AACC57-2314-3863-94B2-64AB3E002B35> /usr/lib/system/libkxld.dylib
0x7fff719b7000 - 0x7fff719b7ff7 liblaunch.dylib (1738.140.1) <AFBCBDD3-0B55-3ECD-8E04-A73A3A57356B> /usr/lib/system/liblaunch.dylib
0x7fff719b8000 - 0x7fff719bdff7 libmacho.dylib (959.0.1) <AA613A9C-961A-3B67-B696-4622FA59FC4E> /usr/lib/system/libmacho.dylib
0x7fff719be000 - 0x7fff719c0ff3 libquarantine.dylib (110.40.3) <F234E51D-FD0B-3EE4-B679-AE3EE9C536C3> /usr/lib/system/libquarantine.dylib
0x7fff719c1000 - 0x7fff719c2ff7 libremovefile.dylib (48) <7C7EFC79-BD24-33EF-B073-06AED234593E> /usr/lib/system/libremovefile.dylib
0x7fff719c3000 - 0x7fff719daff3 libsystem_asl.dylib (377.60.2) <1563EE02-0657-3B78-99BE-A947C24122EF> /usr/lib/system/libsystem_asl.dylib
0x7fff719db000 - 0x7fff719dbff7 libsystem_blocks.dylib (74) <0D53847E-AF5F-3ACF-B51F-A15DEA4DEC58> /usr/lib/system/libsystem_blocks.dylib
0x7fff719dc000 - 0x7fff71a63fff libsystem_c.dylib (1353.100.2) <BBDED5E6-A646-3EED-B33A-91E4331EA063> /usr/lib/system/libsystem_c.dylib
0x7fff71a64000 - 0x7fff71a67ffb libsystem_configuration.dylib (1061.141.1) <0EE84C33-64FD-372B-974A-AF7A136F2068> /usr/lib/system/libsystem_configuration.dylib
0x7fff71a68000 - 0x7fff71a6bfff libsystem_coreservices.dylib (114) <A199156E-058D-3ABB-BCE9-4B9F20DCED0F> /usr/lib/system/libsystem_coreservices.dylib
0x7fff71a6c000 - 0x7fff71a74fff libsystem_darwin.dylib (1353.100.2) <5B12B5DB-3F30-37C1-8ECC-49A66B1F2864> /usr/lib/system/libsystem_darwin.dylib
0x7fff71a75000 - 0x7fff71a7cfff libsystem_dnssd.dylib (1096.100.3) <EBB4C2C2-E031-3094-B40A-E67BF261D295> /usr/lib/system/libsystem_dnssd.dylib
0x7fff71a7d000 - 0x7fff71a7effb libsystem_featureflags.dylib (17) <29FD922A-EC2C-3F25-BCCC-B58D716E60EC> /usr/lib/system/libsystem_featureflags.dylib
0x7fff71a7f000 - 0x7fff71accff7 libsystem_info.dylib (538) <8A321605-5480-330B-AF9E-64E65DE61747> /usr/lib/system/libsystem_info.dylib
0x7fff71acd000 - 0x7fff71af9ff7 libsystem_kernel.dylib (6153.141.2.2) <5CDBBC06-6CA6-3432-9FDA-681047866F3E> /usr/lib/system/libsystem_kernel.dylib
0x7fff71afa000 - 0x7fff71b41fff libsystem_m.dylib (3178) <00F331F1-0D09-39B3-8736-1FE90E64E903> /usr/lib/system/libsystem_m.dylib
0x7fff71b42000 - 0x7fff71b69fff libsystem_malloc.dylib (283.100.6) <8549294E-4C53-36EB-99F3-584A7393D8D5> /usr/lib/system/libsystem_malloc.dylib
0x7fff71b6a000 - 0x7fff71b77ffb libsystem_networkextension.dylib (1095.140.2) <F06C65C5-2CBE-313C-96E1-A09240F9FE57> /usr/lib/system/libsystem_networkextension.dylib
0x7fff71b78000 - 0x7fff71b81ff7 libsystem_notify.dylib (241.100.2) <FA22F928-D91B-3AA5-96BB-3186AC0FB264> /usr/lib/system/libsystem_notify.dylib
0x7fff71b82000 - 0x7fff71b8afef libsystem_platform.dylib (220.100.1) <009A7C1F-313A-318E-B9F2-30F4C06FEA5C> /usr/lib/system/libsystem_platform.dylib
0x7fff71b8b000 - 0x7fff71b95fff libsystem_pthread.dylib (416.100.3) <62CB1A98-0B8F-31E7-A02B-A1139927F61D> /usr/lib/system/libsystem_pthread.dylib
0x7fff71b96000 - 0x7fff71b9aff3 libsystem_sandbox.dylib (1217.141.2) <051C4018-4345-3034-AC98-6DE42FB8273B> /usr/lib/system/libsystem_sandbox.dylib
0x7fff71b9b000 - 0x7fff71b9dfff libsystem_secinit.dylib (62.100.2) <F80872AA-E1FD-3D7E-8729-467656EC6561> /usr/lib/system/libsystem_secinit.dylib
0x7fff71b9e000 - 0x7fff71ba5ffb libsystem_symptoms.dylib (1238.120.1) <5820A2AF-CE72-3AB3-ABCC-273A3419FB55> /usr/lib/system/libsystem_symptoms.dylib
0x7fff71ba6000 - 0x7fff71bbcff2 libsystem_trace.dylib (1147.120) <04B47629-847B-3D74-8ABE-C05EF9DEEFE4> /usr/lib/system/libsystem_trace.dylib
0x7fff71bbe000 - 0x7fff71bc3ff7 libunwind.dylib (35.4) <42B7B509-BAFE-365B-893A-72414C92F5BF> /usr/lib/system/libunwind.dylib
0x7fff71bc4000 - 0x7fff71bf9ffe libxpc.dylib (1738.140.1) <3E243A41-030F-38E3-9FD2-7B38C66C35B1> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 77392
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=822.1M resident=0K(0%) swapped_out_or_unallocated=822.1M(100%)
Writable regions: Total=852.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=852.7M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 1160K 2
CG image 1420K 13
CoreAnimation 51.4M 42
CoreGraphics 8K 1
CoreImage 320K 13
CoreUI image data 1152K 11
Foundation 28K 2
Image IO 376K 14
JS VM Isolated Heap 40K 2
Kernel Alloc Once 8K 1
MALLOC 393.1M 197
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 612K 3 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
SQLite page cache 64K 1
STACK GUARD 56.0M 7
Stack 11.0M 7
VM_ALLOCATE 240K 23
WebKit Malloc 7272K 9
__DATA 46.0M 475
__DATA_CONST 97K 5
__FONT_DATA 4K 1
__LINKEDIT 401.7M 68
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 420.3M 444
__UNICODE 564K 1
mapped file 281.7M 51
shared memory 644K 17
=========== ======= =======
TOTAL 2.0G 1424
TOTAL, minus reserved VM space 1.7G 1424
Model: MacBookPro14,3, BootROM 428.0.0.0.0, 4 processors, Quad-Core Intel Core i7, 2.8 GHz, 16 GB, SMC 2.45f4
Graphics: kHW_IntelHDGraphics630Item, Intel HD Graphics 630, spdisplays_builtin
Graphics: kHW_AMDRadeonPro555Item, Radeon Pro 555, spdisplays_pcie_device, 2 GB
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C31473332443450472D30393320
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x173), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1615.2)
Bluetooth: Version 7.0.6f7, 3 services, 18 devices, 1 incoming serial ports
Network Service: Apple USB Ethernet Adapter, Ethernet, en5
Network Service: USB 10/100/1000 LAN, Ethernet, en8
Network Service: Wi-Fi, AirPort, en0
Network Service: Thunderbolt Bridge, Ethernet, bridge0
USB Device: USB3.0 Hub
USB Device: USB 10/100/1000 LAN
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
USB Device: USB2.0 Hub
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Would really appreciate if someone can figure this out.
Application Specific Information:
dyld: in dlopen()
/Users/dhirajkhanna/opt/anaconda3/lib/libmkl_intel_thread.dylib
This looks like a problem in your Anaconda installation. I'd recommend either updating, or using a different copy of Python (e.g. a system installation of Python with a virtual environment derived from that install)
This is my session info:
And this is post loading
reticulate
This is the output of
py_config()
Now when I try to open a REPL in the R session, it seems to work for operations like
2+2
. However if I try to import a Python library, RStudio crashes. As soon as I start typing 'import' the crash occurs. It happens even when I am trying to type 'exit'.I get the "Error Retrieving Help - Unable to establish connection with R session" popup. On clicking Ok, I get the "R Session Aborted" popup and RStudio crashes.
Doing the same thing in R gives me a segmentation fault. More details available here: https://stackoverflow.com/questions/59835609/trouble-loading-python-in-rstudio-with-reticulate