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rstudio / rticles

LaTeX Journal Article Templates for R Markdown
https://pkgs.rstudio.com/rticles/
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wellcomeor can't be rendered anymore #523

Open cderv opened 1 year ago

cderv commented 1 year ago

Issue with rticles::wellcomeor_article that makes our CI fail 

! Undefined control sequence.
\__hook begindocument/end ...f \lastpage@putlabel 
                                                  {\relax }\__hook_toplevel ...
l.45 \begin{document}

I don't know what the issue is really - I have look around and can't find the issue. It is something with a package that use begin hooks

the specific .sty file from Overleaf hasn't been update in 6 years it seems. and the Journal website does not offer templates.

I'll be deactivating tests in the package to fix CI for now, and we'll try to fix it if we find more information.

cc @yihui if you have some idea or insights

cc @arnold-c as you submitted initially in #436 - maybe you can help us on this

yihui commented 1 year ago

I have no idea. I've never seen this error before.

arnold-c commented 1 year ago

Happy to look into it.

I've had a quick look and couldn't find a whole lot, though I'll have a bit more time this week to explore. Trying to render the skeleton.Rmd on my laptop produced the following relevant code in the skeleton.log file. I'm not sure if this is helpful as I couldn't find anything related online, but given you both know more about LaTeX than I do it's possible it might contain something useful.

`skeleton.log`

``` This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex 2023.3.20) 2 APR 2023 13:37 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **skeleton.tex (./skeleton.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (/usr/local/texlive/2022/texmf-dist/tex/latex /base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/local/texlive/2022/texmf-dist/tex/latex/base/size10.clo File: size10.clo 2022/07/02 v1.4n Standard LaTeX file (size option) ) \c@part=\count185 \c@section=\count186 \c@subsection=\count187 \c@subsubsection=\count188 \c@paragraph=\count189 \c@subparagraph=\count190 \c@figure=\count191 \c@table=\count192 \abovecaptionskip=\skip48 \belowcaptionskip=\skip49 \bibindent=\dimen140 ) (./WellcomeOR_styles.sty Package: WellcomeOR_styles (/usr/local/texlive/2022/texmf-dist/tex/latex/preprint/authblk.sty Package: authblk 2001/02/27 1.3 (PWD) \affilsep=\skip50 \@affilsep=\skip51 \c@Maxaffil=\count193 \c@authors=\count194 \c@affil=\count195 ) (/usr/local/texlive/2022/texmf-dist/tex/generic/babel/babel.sty Package: babel 2023/02/13 3.86 The Babel package \babel@savecnt=\count196 \U@D=\dimen141 \l@unhyphenated=\language87 (/usr/local/texlive/2022/texmf-dist/tex/generic/babel/txtbabel.def) \bbl@readstream=\read2 \bbl@dirlevel=\count197 (/usr/local/texlive/2022/texmf-dist/tex/generic/babel-english/english.ldf Language: english 2017/06/06 v3.3r English support from the babel system Package babel Info: Hyphen rules for 'canadian' set to \l@english (babel) (\language0). Reported on input line 102. Package babel Info: Hyphen rules for 'australian' set to \l@ukenglish (babel) (\language21). Reported on input line 105. Package babel Info: Hyphen rules for 'newzealand' set to \l@ukenglish (babel) (\language21). Reported on input line 108. )) (/usr/local/texlive/2022/texmf-dist/tex/generic/babel/locale/en/babel-english.t ex Package babel Info: Importing font and identification data for english (babel) from babel-en.ini. 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It should not contain an `m'! Please correct it. Found on input line 53. LaTeX Info: Font shape OT1/phv/mc/sc has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 56. LaTeX Info: Font shape OT1/phv/mc/sl has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 59. LaTeX Info: Font shape OT1/phv/mc/it has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 79. LaTeX Info: Font shape T1/phv/mc/n has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 102. LaTeX Info: Font shape T1/phv/mc/sc has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 105. LaTeX Info: Font shape T1/phv/mc/sl has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 108. LaTeX Info: Font shape T1/phv/mc/it has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 128. LaTeX Info: Font shape OT1/uhv/mc/n has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 259. LaTeX Info: Font shape OT1/uhv/mc/sc has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 262. LaTeX Info: Font shape OT1/uhv/mc/sl has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 265. LaTeX Info: Font shape OT1/uhv/mc/it has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 268. LaTeX Info: Font shape T1/uhv/mc/n has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 313. LaTeX Info: Font shape T1/uhv/mc/sc has incorrect series value `mc'. It should not contain an `m'! Please correct it. Found on input line 316. 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LaTeX Font Info: Overwriting math alphabet `\mathrm' in version `normal' (Font) OT1/mdbch/m/n --> T1/mdbch/m/n on input line 131. LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `normal' (Font) OT1/cmr/bx/n --> T1/mdbch/b/n on input line 132. LaTeX Font Info: Overwriting math alphabet `\mathit' in version `normal' (Font) OT1/cmr/m/it --> T1/mdbch/m/it on input line 133. LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `normal' (Font) OT1/cmss/m/n --> T1/cmss/m/n on input line 134. LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `normal' (Font) OT1/cmtt/m/n --> T1/cmtt/m/n on input line 135. LaTeX Font Info: Overwriting math alphabet `\mathrm' in version `bold' (Font) OT1/mdbch/b/n --> T1/mdbch/b/n on input line 137. LaTeX Font Info: Overwriting math alphabet `\mathbf' in version `bold' (Font) OT1/cmr/bx/n --> T1/mdbch/b/n on input line 138. LaTeX Font Info: Overwriting math alphabet `\mathit' in version `bold' (Font) OT1/cmr/bx/it --> T1/mdbch/b/it on input line 139. LaTeX Font Info: Overwriting math alphabet `\mathsf' in version `bold' (Font) OT1/cmss/bx/n --> T1/cmss/b/n on input line 140. LaTeX Font Info: Overwriting math alphabet `\mathtt' in version `bold' (Font) OT1/cmtt/m/n --> T1/cmtt/b/n on input line 141. \symlettersupright=\mathgroup6 LaTeX Font Info: Overwriting symbol font `lettersupright' in version `bold' (Font) OML/mdbch/m/n --> OML/mdbch/b/n on input line 144. LaTeX Font Info: Redeclaring math alphabet \mathrm on input line 145. LaTeX Font Info: Overwriting math alphabet `\mathcal' in version `normal' (Font) OMS/mdbch/m/n --> OMS/mdbch/m/n on input line 167. (/usr/local/texlive/2022/texmf-dist/tex/latex/xkeyval/xkeyval.sty Package: xkeyval 2022/06/16 v2.9 package option processing (HA) (/usr/local/texlive/2022/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/local /texlive/2022/texmf-dist/tex/generic/xkeyval/xkvutils.tex \XKV@toks=\toks19 \XKV@tempa@toks=\toks20 ) \XKV@depth=\count198 File: xkeyval.tex 2014/12/03 v2.7a key=value parser (HA) )) LaTeX Font Info: Trying to load font information for T1+mdbch on input line 186. (/usr/local/texlive/2022/texmf-dist/tex/latex/mathdesign/mdbch/t1mdbch.fd File: t1mdbch.fd 2013/08/29 Fontinst v1.933 font definitions for T1/mdbch. ) LaTeX Font Info: Font shape `T1/mdbch/m/n' will be (Font) scaled to size 9.60007pt on input line 186. LaTeX Font Info: Redeclaring math accent \widetilde on input line 449. LaTeX Font Info: Redeclaring math accent \widehat on input line 450. 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Undefined control sequence. \__hook begindocument/end ...f \lastpage@putlabel {\relax }\__hook_toplevel ... l.45 \begin{document} Here is how much of TeX's memory you used: 26173 strings out of 476024 482352 string characters out of 5790018 1849388 words of memory out of 5000000 46179 multiletter control sequences out of 15000+600000 515116 words of font info for 34 fonts, out of 8000000 for 9000 1141 hyphenation exceptions out of 8191 114i,1n,131p,469b,396s stack positions out of 10000i,1000n,20000p,200000b,200000s ! ==> Fatal error occurred, no output PDF file produced! ```

cderv commented 1 year ago

Thanks @arnold-c !

The error I shared in first post comes from the log file. By experience, this is some error happening in the hooks provided by \begin{document}. (about hooks: https://ctan.math.illinois.edu/macros/latex/base/lthooks-doc.pdf - Chapter : 3.2 Hooks provided by \begin{document})

Possibly the class file, or one of the dependency loaded as an issue with latest LaTeX. We add some issues in the past that looks similar: https://github.com/rstudio/rticles/issues/329#issuecomment-711780408 but not a fix as straightforward to apply and different timing too.