rstudio / tinytex

A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live
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Cannot Render Quarto to PDF. tlmgr.exe will not install. #422

Closed landmancline closed 12 months ago

landmancline commented 1 year ago
I am unable to Render Quarto to PDF. I have tried to install Live Tex and TinyTex. I have found tlgmr.bat installed at `C:\texlive\2023\bin\windows`, but tlgmr.exe does not install. I get the error that tlmgr cannot be found. I tried installing TexLive as administrator, that did nothing. R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22621), RStudio 2023.6.0.421 Locale: LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 LC_NUMERIC=C LC_TIME=English_United States.utf8 Package version: compiler_4.2.2 evaluate_0.21 graphics_4.2.2 grDevices_4.2.2 highr_0.10 knitr_1.44 methods_4.2.2 remotes_2.4.2.1 rstudioapi_0.15.0 stats_4.2.2 tools_4.2.2 utils_4.2.2 xfun_0.39 yaml_2.3.7 --- processing file: Install-Quarto.rmarkdown output file: Install-Quarto.knit.md pandoc to: latex output-file: Install-Quarto.tex standalone: true pdf-engine: xelatex variables: graphics: true tables: true default-image-extension: pdf metadata documentclass: scrartcl classoption: - DIV=11 - numbers=noendperiod papersize: letter header-includes: - '\KOMAoption{captions}{tableheading}' block-headings: true title: PDF Engines editor: visual running xelatex - 1 This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode updating tlmgr updating existing packages compilation failed- error Undefined control sequence. Delete the entire C:\texlive directory l.275 ...f{Delete the entire C:\texlive directory} . This will remove all see Install-Quarto.log for more information. This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex 2023.9.21) 21 SEP 2023 13:44 entering extended mode restricted \write18 enabled. %&-line parsing enabled. **Install-Quarto.tex (./Install-Quarto.tex LaTeX2e <2023-06-01> patch level 1 L3 programming layer <2023-08-29> (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrartcl.cls Document Class: scrartcl 2023/07/07 v3.41 KOMA-Script document class (article) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrkbase.sty Package: scrkbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-dependent b asics and keyval usage) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrbase.sty Package: scrbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-independent basics and keyval usage) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile.sty Package: scrlfile 2023/07/07 v3.41 KOMA-Script package (file load hooks) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty Package: scrlfile-hook 2023/07/07 v3.41 KOMA-Script package (using LaTeX hooks) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrlogo.sty Package: scrlogo 2023/07/07 v3.41 KOMA-Script package (logo) ))) (c:/texlive/2023/texmf-dist/tex/latex/graphics/keyval.sty Package: keyval 2022/05/29 v1.15 key=value parser (DPC) \KV@toks@=\toks17 ) Applying: [2021/05/01] Usage of raw or classic option list on input line 252. Already applied: [0000/00/00] Usage of raw or classic option list on input line 368. )) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/tocbasic.sty Package: tocbasic 2023/07/07 v3.41 KOMA-Script package (handling toc-files) \scr@dte@tocline@numberwidth=\skip48 \scr@dte@tocline@numbox=\box51 ) Package tocbasic Info: omitting babel extension for `toc' (tocbasic) because of feature `nobabel' available (tocbasic) for `toc' on input line 133. Class scrartcl Info: File `scrsize11pt.clo' used instead of (scrartcl) file `scrsize11.clo' to setup font sizes on input line 244 1. (c:/texlive/2023/texmf-dist/tex/latex/koma-script/scrsize11pt.clo File: scrsize11pt.clo 2023/07/07 v3.41 KOMA-Script font size class option (11pt ) ) (c:/texlive/2023/texmf-dist/tex/latex/koma-script/typearea.sty Package: typearea 2023/07/07 v3.41 KOMA-Script package (type area) \ta@bcor=\skip49 \ta@div=\count181 Package typearea Info: You've used standard option `letterpaper'. (typearea) This is correct! (typearea) Internally I'm using `paper=letter'. (typearea) If you'd like to set the option with \KOMAoptions, (typearea) you'd have to use `paper=letter' there (typearea) instead of `letterpaper', too. \ta@hblk=\skip50 \ta@vblk=\skip51 \ta@temp=\skip52 \footheight=\skip53 Package typearea Info: These are the values describing the layout: (typearea) DIV = 11 (typearea) BCOR = 0.0pt (typearea) \paperwidth = 614.295pt (typearea) \textwidth = 446.76004pt (typearea) DIV departure = -14% (typearea) \evensidemargin = 11.49748pt (typearea) \oddsidemargin = 11.49748pt (typearea) \paperheight = 794.96999pt (typearea) \textheight = 582.20026pt (typearea) \topmargin = -37.40001pt (typearea) \headheight = 17.0pt (typearea) \headsep = 20.40001pt (typearea) \topskip = 11.0pt (typearea) \footskip = 47.6pt (typearea) \baselineskip = 13.6pt (typearea) on input line 1799. ) \c@part=\count182 \c@section=\count183 \c@subsection=\count184 \c@subsubsection=\count185 \c@paragraph=\count186 \c@subparagraph=\count187 \scr@dte@section@maxnumwidth=\skip54 Class scrartcl Info: using compatibility default `runin=bysign' (scrartcl) for `\section on input line 5082. Class scrartcl Info: using compatibility default `afterindent=bysign' (scrartcl) for `\section on input line 5082. \scr@dte@part@maxnumwidth=\skip55 Class scrartcl Info: using compatibility default `afterindent=false' (scrartcl) for `\part on input line 5090. \scr@dte@subsection@maxnumwidth=\skip56 Class scrartcl Info: using compatibility default `runin=bysign' (scrartcl) for `\subsection on input line 5100. Class scrartcl Info: using compatibility default `afterindent=bysign' (scrartcl) for `\subsection on input line 5100. \scr@dte@subsubsection@maxnumwidth=\skip57 Class scrartcl Info: using compatibility default `runin=bysign' (scrartcl) for `\subsubsection on input line 5110. Class scrartcl Info: using compatibility default `afterindent=bysign' (scrartcl) for `\subsubsection on input line 5110. \scr@dte@paragraph@maxnumwidth=\skip58 Class scrartcl Info: using compatibility default `runin=bysign' (scrartcl) for `\paragraph on input line 5121. Class scrartcl Info: using compatibility default `afterindent=bysign' (scrartcl) for `\paragraph on input line 5121. \scr@dte@subparagraph@maxnumwidth=\skip59 Class scrartcl Info: using compatibility default `runin=bysign' (scrartcl) for `\subparagraph on input line 5131. Class scrartcl Info: using compatibility default `afterindent=bysign' (scrartcl) for `\subparagraph on input line 5131. \abovecaptionskip=\skip60 \belowcaptionskip=\skip61 \c@pti@nb@sid@b@x=\box52 Package tocbasic Info: omitting babel extension for `lof' (tocbasic) because of feature `nobabel' available (tocbasic) for `lof' on input line 6309. \scr@dte@figure@maxnumwidth=\skip62 \c@figure=\count188 Package tocbasic Info: omitting babel extension for `lot' (tocbasic) because of feature `nobabel' available (tocbasic) for `lot' on input line 6325. \scr@dte@table@maxnumwidth=\skip63 \c@table=\count189 Class scrartcl Info: Redefining `\numberline' on input line 6495. \bibindent=\dimen140 ) (c:/texlive/2023/texmf-dist/tex/latex/amsmath/amsmath.sty Package: amsmath 2023/05/13 v2.17o AMS math features \@mathmargin=\skip64 For additional information on amsmath, use the `?' option. 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LaTeX Info: Redefining \Relbar on input line 971. \c@MaxMatrixCols=\count196 \dotsspace@=\muskip16 \c@parentequation=\count197 \dspbrk@lvl=\count198 \tag@help=\toks19 \row@=\count199 \column@=\count266 \maxfields@=\count267 \andhelp@=\toks20 \eqnshift@=\dimen144 \alignsep@=\dimen145 \tagshift@=\dimen146 \tagwidth@=\dimen147 \totwidth@=\dimen148 \lineht@=\dimen149 \@envbody=\toks21 \multlinegap=\skip65 \multlinetaggap=\skip66 \mathdisplay@stack=\toks22 LaTeX Info: Redefining \[ on input line 2953. LaTeX Info: Redefining \] on input line 2954. ) (c:/texlive/2023/texmf-dist/tex/latex/amsfonts/amssymb.sty Package: amssymb 2013/01/14 v3.01 AMS font symbols (c:/texlive/2023/texmf-dist/tex/latex/amsfonts/amsfonts.sty Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support \symAMSa=\mathgroup4 \symAMSb=\mathgroup5 LaTeX Font Info: Redeclaring math symbol \hbar on input line 98. 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LaTeX Font Info: Font shape `TU/latinmodern-math.otf(3)/m/n' will be (Font) scaled to size 10.94882pt on input line 203. LaTeX Font Info: Font shape `TU/latinmodern-math.otf(3)/m/n' will be (Font) scaled to size 7.66417pt on input line 203. LaTeX Font Info: Font shape `TU/latinmodern-math.otf(3)/m/n' will be (Font) scaled to size 5.47441pt on input line 203. Overfull \hbox (106.38895pt too wide) in paragraph at lines 252--254 []\TU/lmr/m/n/10.95 How to print the list of packages installed on TeX Live to a file? https://tex.stackexchange.com/questions/56009/how- [] [1 ] ! Undefined control sequence. Delete the entire C:\texlive directory l.275 ...f{Delete the entire C:\texlive directory} . This will remove all Here is how much of TeX's memory you used: 37941 strings out of 475585 789794 string characters out of 5777122 1923416 words of memory out of 5000000 58729 multiletter control sequences out of 15000+600000 564500 words of font info for 86 fonts, out of 8000000 for 9000 1348 hyphenation exceptions out of 8191 108i,7n,120p,10909b,919s stack positions out of 10000i,1000n,20000p,200000b,200000s Output written on Install-Quarto.pdf (1 page). By filing an issue to this repo, I promise that - [X ] I have fully read the issue guide at https://yihui.org/issue/ and I have understood the guide to the best of my ability. - [X ] I believe I have provided the necessary information about my issue. - If I'm asking a question, I have already asked it on Stack Overflow or RStudio Community, waited for at least 24 hours, and included a link to my question there. - If I'm filing a bug report, I have included a minimal, self-contained, and reproducible example, and have also included `xfun::session_info('tinytex')`. I have upgraded all my packages to their latest versions (e.g., R, RStudio, and R packages), and also tried the development version: `remotes::install_github('rstudio/tinytex')`. - If I have posted the same issue elsewhere, I have also mentioned it in this issue. - [ X] I have attempted to learn the Github Markdown syntax, and formatted my issue correctly. I understand that my issue may be closed if I don't fulfill my promises. [Install Quarto - qmd.txt](https://github.com/rstudio/tinytex/files/12691922/Install.Quarto.-.qmd.txt) [TexLiveInstalledFiles.csv](https://github.com/rstudio/tinytex/files/12691942/TexLiveInstalledFiles.csv)
landmancline commented 1 year ago

Install-Quarto.tex.txt I add the Quarto.tex file, if that should provide any insight into this issue.

cderv commented 12 months ago

@landmancline just a note that you should try to format correctly your post so that this is readable: https://yihui.org/issue/#please-format-your-issue-correctly

i'll look into the files

cderv commented 12 months ago

Looking at your .qmd

Don't try to run some TinyTeX update or installation from within a Quarto Render or a R Markdown render. More generally, don't install anything from within a document render. This is not suitable and can cause issue. The commands should be run in R console or terminal.

As you are using Quarto, know that you can use Quarto to install TinyTeX using a terminal command : https://quarto.org/docs/output-formats/pdf-engine.html#installing-tex

Otherwise, from R, you should indeed run tinytex::install_tinytex()

However, I understand you have C:\texlive\2023\bin\windows which is a probably a global TeX Live installation. Either uninstall it manually, or if you want to keep that, be sure that you have but tlmgr into the PATH. See TeX live doc: https://tug.org/texlive/doc/tlmgr.html#path

In your can it should be

C:\texlive\2023\bin\windows\tlmgr.bat path add

Maybe you need some command line flags from the doc link just before.

Aim is to add tlmgr.bat into the PATH.

However know that

Hope it helps clean up your environment installations

landmancline commented 12 months ago

Can I just add the tlmgr.exe file to see if it will then run? Could you email me that fike to see if it can be added manually? Installation process is not creating it.

I think that just deleting the livetex folder leaves evidence of a prior installation, or it could be the texlive path in the Environmental Variable that is detected and is somehow preventing the tlmgr.exe file from being created during the installation.

All of the install chunks were set to eval=false, and the install commands were commented out so they would only execute manually.

I did this to document what I had done. Rendering the qmd does not execute any of the install codes.

I have uninstalled and installed texlive four times. I have had to manually delete the texlive folder. The control panel does not show the existence of a texlive installation.

When reinstalling, tlmgr.bat is installed and is in the path. Tlmgr.exe is not anywhere on my machine. tlmgr.exe is not added during the install.

My Environmental Variable Path: C:\texlive\2023\bin\win64

During quarto render a process:

(running xelatex - 1 This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode updating tlmgr *) *

tries to add tlmfr.exe but it doesn't; and the whole render process fails because of the missing tlmgr.exe file.

running xelatex - 1 This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode

updating tlmgr

updating existing packages

compilation failed- error Undefined control sequence. l.275 \textbf{Delete the entire C:}\texlive directory. This will remove all

see Install-Quarto.log for more information.

On Fri, Sep 22, 2023, at 03:59, Christophe Dervieux wrote:

Looking at your .qmd

Don't try to run some TinyTeX update or installation from within a Quarto Render or a R Markdown render. More generally, don't install anything from within a document render. This is not suitable and can cause issue. The commands should be run in R console or terminal.

As you are using Quarto, know that you can use Quarto to install TinyTeX using a terminal command : https://quarto.org/docs/output-formats/pdf-engine.html#installing-tex

Otherwise, from R, you should indeed run tinytex::install_tinytex()

However, I understand you have C:\texlive\2023\bin\windows which is a probably a global TeX Live installation. Either uninstall it manually, or if you want to keep that, be sure that you have but tlmgr into the PATH. See TeX live doc: https://tug.org/texlive/doc/tlmgr.html#path

In your can it should be

C:\texlive\2023\bin\windows\tlmgr.bat path add Maybe you need some command line flags from the doc link just before.

Aim is to add tlmgr.bat into the PATH.

However know that

• Installing TinyTeX with quarto can live with a system TeX Live, and quarto will choose TinyTeX • A system install can be used if you prefer it though. Hope it helps clean up your environment installations

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landmancline commented 12 months ago

RESOLVED: Christophe Dervieux suggested adding a path to the tlmgr.bat file.

The Environmental variable path was set during installation to C:\texlive\2023\bin\win64

By adding a new PATH = C:\texlive\2023\bin\win64\tlmgr.bat rendering the PDF in Quarto no longer fails. I am now able to render without errors. THANK YOU.

cderv commented 12 months ago

Tlmgr.exe is not anywhere on my machine. tlmgr.exe is not added during the install.

FWIW tlmgr.exe does not exist. It is tlmgr.bat only.

C:\texlive\2023\bin\windows\tlmgr.bat path add

This should be how you manage to add the bat file to PATH. However, doing it manually works too !

Glad it works now