No .cns file - Githubissues

ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads

GNU General Public License v3.0

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Closed HTaekOppa closed 6 years ago

HTaekOppa commented 6 years ago

Dear SMARTdenovo,

Hope this email finds you well. I assume “smartdenovo.pl” includes all these programs: wtzmo, wtgbo, wtclp, ctcns, and wtmsa.

After running this script /smartdenovo/smartdenovo.pl -p prefix reads.fa > prefix.mak make -f prefix.mak

It was supposed to generate “prefix.cns” but I could not find it. The generated files are .lay, .lay.dup, .lay.utg, .lay.utg.dup, and dmo.ovl.

Did I miss something?

Looking forward to your reply!

Best regards,

Taek

ruanjue commented 6 years ago

Please have a look at #12 . If the smartdenovo.pl -c 1 doesn't work for you too, please give me a message.