output fastq from wtcns

ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads

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output fastq from wtcns #20

Closed njaupan closed 6 years ago

njaupan commented 6 years ago

Dear ruanjue,

May i ask can i get fastq file from wtcns? I need fastq file for downstream analysis such as reads alignment. From now, i can only obtain fasta from wtcns.

Best, panpan

ruanjue commented 6 years ago

wtcns doesn't evaluate the base quality of cosnensus sequences, so no quality available. One way to generate fastq is set all base quanlity to 30.