How does a SMARTdenovo output file look like

[biowackysci]

Hello All, I am trying to do a smartdenovo assembly on my PacBio and Nanopore MinION and PromethION generated data. I got upto the .cns files and then I am not sure what is meant to happen from there. I was hoping a summary file with the number of contigs and the N50 all that would be generated but could not find any of it. Can you suggest how do i look for it, please? I use the script /group/pasture/Saila/Smartdenovo/smartdenovo-master/smartdenovo.pl -p saila_smartdenovo -c 1 /group/pasture/Saila/Smartdenovo/all_fastq_files/all_fastq_files_smartdenovo.fastq > saila_smartdenovo.mak

make -f saila_smartdenovo.mak

The type of files I got so far are .cns.log .cns .lay.utg.dup .utg .lnk .dup .lay .lay.1/2/3/4/5.dot lay.contained_reads .dmo.obt .ovl.contained .ovl

And no summary or fasta files. So I am a bit confused about it.

Thanks Saila

[ruanjue]

Please have a look at the .cns file, the contig sequences.

BTW, I will maintain more on wtdbg2 than SMARTdenovo, have a try.

[biowackysci]

Thanks for your help :)