Should nanopores reads be corrected by canu or other corrector before using smartdenovo

ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads

GNU General Public License v3.0

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Should nanopores reads be corrected by canu or other corrector before using smartdenovo #34

Closed ncgrjsmiao closed 5 years ago

ncgrjsmiao commented 5 years ago

Should nano pores reads be corrected by canu or other corrector before using smartdenovo

ruanjue commented 5 years ago

SMARTdenovo was designed to be a standalone assembler, it can assemble uncorrected nanopore reads. However, if the error correction improve assembly results, please do it.