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ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads
GNU General Public License v3.0
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error while running smartdenovo #38

Closed tanu121093 closed 4 years ago

tanu121093 commented 5 years ago

i am getting the following error when i run the software, the following commands were used to run /home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.mak make -f haemo3_smartdenovo.mak make -f pbp_smartdenovo.mak
make: pbp_smartdenovo.mak: No such file or directory make: *** No rule to make target `pbp_smartdenovo.mak'. Stop. help to resolve this issue

ruanjue commented 5 years ago

Please confirm this commands

/home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.mak
make -f haemo3_smartdenovo.mak
make -f pbp_smartdenovo.mak

OR

/home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.mak make -f haemo3_smartdenovo.mak
make -f pbp_smartdenovo.mak
tanu121093 commented 5 years ago

the command used were

/home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.makmake -f haemo3_smartdenovo.mak

On 07/28/19 01:30 PM, Jue Ruan notifications@github.com wrote:

Please confirm this commands

/home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.makmake -f haemo3_smartdenovo.makmake -f pbp_smartdenovo.mak

OR

/home/pbp/smartdenovo/smartdenovo.pl -p haemo3_smartdenovo -c 1 /home/pbp/Documents/run7/run7_filtered/PSHaemo3.fastq > /home/pbp/Documents/run7/run7_filtered/haemo3_smartdenovo.mak make -f haemo3_smartdenovo.makmake -f pbp_smartdenovo.mak

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ruanjue commented 4 years ago

Please type your commands in the well format, also give me the error message.