Died at ./smartdenovo-master/smartdenovo.pl line 23.

[baizixiansheng]

Hi, I had downloaded smartdenovo，and running the command：

-bash-4.1$ ./smartdenovo-master/smartdenovo.pl -c 1 ~/scsio/Nanopore/Data/N_all_filt.fq > wtasm.mak but the error coming: Died at ./smartdenovo-master/smartdenovo.pl line 23. I don't know how to deal with it. Could you tell me how to do about it? Thank you.

[ruanjue]

Put programs under the same directory with smartdenovo.pl.

[baizixiansheng]

Thank you very much for your answer. But I've just tried a few minutes ago, and it still make mistakes: Died at ./smartdenovo-master/smartdenovo.pl line 23. My command is： ./smartdenovo.pl -p prefix -c 1 N_all_filt.fq > prefix.mak And the line 23 of smartdenovo.pl is: $opts{pre} = gwhich("wtpre") || die;

[ruanjue]

Have you compile smartdenovo?

[baizixiansheng]

Sorry, I realized that when I compile it, there was a mistake: wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’ wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’ wtzmo.c:1738: error: ‘FileReader’ has no member named ‘tabs’ wtzmo.c:1766: error: ‘FileReader’ has no member named ‘tabs’ wtzmo.c:1767: error: ‘FileReader’ has no member named ‘tabs’ make: *** [wtzmo] Error 1 And I running the command again: ./smartdenovo.pl -p prefix -c 1 N_all_filt.fq > prefix.mak The error became: $opts{zmo} = gwhich("wtzmo") || die;

[ruanjue]

https://github.com/ruanjue/smartdenovo/issues/17

[baizixiansheng]

Oh, I get it! Thank you with all my heart!