Open darmac opened 4 years ago
I want use it on my aarch64(arm64) platform. It means I must use SSE2NEON.h instead of emmintrin.h in ksw.c. and the arm version gcc cannot use "-mpopcnt" and "-mssse3".
SSE2NEON.h
emmintrin.h
ksw.c
So we need this patch for aarch64 platform:
diff --git a/Makefile b/Makefile index 0802f65..3816b6e 100644 --- a/Makefile +++ b/Makefile @@ -2,9 +2,9 @@ VERSION=1.0.0 MINOR_VER=20140314 CC=gcc ifdef DEBUG -CFLAGS=-g3 -W -Wall -O0 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -mpopcnt -mssse3 +CFLAGS=-g3 -W -Wall -O0 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE else -CFLAGS=-W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -mpopcnt -mssse3 +CFLAGS=-W -Wall -O4 -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE endif INSTALLDIR=/usr/local/bin GLIBS=-lm -lpthread diff --git a/ksw.c b/ksw.c index 15dd0f2..22641ed 100644 --- a/ksw.c +++ b/ksw.c @@ -25,7 +25,7 @@ #include <stdlib.h> #include <stdint.h> -#include <emmintrin.h> +#include "SSE2NEON.h" #include "ksw.h" #ifdef USE_MALLOC_WRAPPERS
Is there any one can help us merge this feature to smartdenovo ?
smartdenovo
I want use it on my aarch64(arm64) platform. It means I must use
SSE2NEON.h
instead ofemmintrin.h
inksw.c
. and the arm version gcc cannot use "-mpopcnt" and "-mssse3".So we need this patch for aarch64 platform:
Is there any one can help us merge this feature to
smartdenovo
?