Does it support multiple input files like input*.fa ?

ruanjue / smartdenovo

Ultra-fast de novo assembler using long noisy reads

GNU General Public License v3.0

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Does it support multiple input files like input*.fa ? #52

Open Ural-Yunusbaev opened 2 years ago

Ural-Yunusbaev commented 2 years ago

Does it support multiple input files like input*.fa.gz ? How to provide multiple input files? For ex I have: input1.fa input2.fa input3.fa

How the command will look like?

ruanjue commented 2 years ago

smartdenovo.pl doesn't support multiple input files. To input more than one files, first, invoke smartdenovo.pl to generate shell scripts on one file, then edit the script, see below.

 wtpre -J 5000 -p pb my_raw_reads_1.fq my_raw_reads_2.fq  | gzip -c - 1 > <PREFIX>.fa.gz