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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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get original fastq from wtdbg read names (S) #104

Closed jacqgg closed 5 years ago

jacqgg commented 5 years ago

Hello,

Is it possible to get original fastq read name from wtdbg read name (S)? E.g. from ctg.lay file: S S0000027464 + 6400 2816 TGAATCATCG... get fastq read id @...

Thanks!

ruanjue commented 5 years ago

what version are you using? wtdbg-2.3 has an option --keep-name. Since wtdbg-2.4, program won't change read names unless using --tidy-name.

It is hard to retrieve original read name from wtdg-2.3's lay file.