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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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Restarting WTDBG2 after computer reboot #155

Closed cabbagesofdoom closed 4 years ago

cabbagesofdoom commented 4 years ago

Hi. I had a WTDBG2 (v2.4) assembly running for over a week when the sys admin had to reboot the server. Is there a way to restart the assembly and get it to pick up where it was, or do I need to re-start it from scratch?

The files it has made so far are:

tiger.wtdbg2v2.events  tiger.wtdbg2v2.kmerdep  tiger.wtdbg2v2.binkmer  tiger.wtdbg2v2.closed_bins  tiger.wtdbg2v2.alignments.gz

I think tiger.wtdbg2v2.alignments.gz was still being updated at the time of the reboot.

ruanjue commented 4 years ago

If alignemnts was not done, you need to run it from the begining.

cabbagesofdoom commented 4 years ago

Thanks.