ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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The log display for the wtdbg2 #187

Closed fredzhou91 closed 4 years ago

fredzhou91 commented 4 years ago

Hi,

I've been recently working on some assembly task and I'm now testing the wtdbg2.

I received the log info displayed as:

......
......
[Sun Apr 12 12:05:14 2020] - indexed  42976855 kmers, 33046838998 instances
[Sun Apr 12 12:05:16 2020] - masked 434905 bins as closed
[Sun Apr 12 12:05:16 2020] - sorting
** PROC_STAT(0) **: real 1718.414 sec, user 70638.190 sec, sys 919.870 sec, maxrss 230373076.0 kB, maxvsize 237792532.0 kB
[Sun Apr 12 12:06:37 2020] Done

then comes the following numebrs after the Done.... 3496000|257378850

May I understanding what are the numbers representing for?

Thank you very much!

Best, Fred

ruanjue commented 4 years ago

This is the progress, <#reads>|<#alignments>.

fredzhou91 commented 4 years ago

Thank you Ruan Jue!

This indeed helps..

Then my task will be finished in one week which is much faster than expected!!!

Best, Fred