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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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Circularization? #224

Open Boston1212 opened 3 years ago

Boston1212 commented 3 years ago

Hi,

I want to know if wtdabg2 can determine whether the strain is circularized.Thanks！！

ruanjue commented 3 years ago

wtdbg2 doesn't check that, but you can view the assembly from <prefix>.ctg.dot (graphviz format).

Boston1212 commented 3 years ago

Thanks for your reply!!! But how to read this file,Is there any description about this file?Any advice would be helpful to me !

ruanjue commented 3 years ago

Please have a look at http://graphviz.org/, you can convert it into a pdf file using dot -Tpdf -O <prefix>.ctg.dot.

Boston1212 commented 3 years ago

I get it,Thanks !!!