search

ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
513 stars 94 forks source link

Re-using kbm2 mapper #238

Open anuradhawick opened 3 years ago

anuradhawick commented 3 years ago

Hi,

Thanks for building fast and efficient tools!

I wanted to ask if there is a separate repository or source of the Kmer Bin Map (KBM2) tool. I am interested in using this part in one of my programs and any help would be appreciated. Is there any deeper explanation on this tool anywhere other than the wtdbg2 paper?

If I am to re-use the module at the code level (ripping out relevant C files), what should be the proper citation? would it be wtdbg2 paper?

Thanks, Anuradha

ruanjue commented 2 years ago

Sorry for late reply. Please use the c files directly. For citation, wtdbg2 paper is ok.