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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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Runtime Issue with warnings #248

Open ghost opened 1 year ago

ghost commented 1 year ago

Hi,

I submitted a script to my HPC (Apocrita) and i'm getting these warnings, on the running file.

Can anyone explain them? image

ruanjue commented 1 year ago

Please paste original command line, there are unused arguments.

ghost commented 1 year ago

Please paste original command line, there are unused arguments.

image

The script i ran ^^

ruanjue commented 1 year ago

There may be something wrong with ${NSPLOTS}. In the last screenshot, you can see the line started with Starting program, no futher parameters recieved by wtdbg2.

ghost commented 1 year ago

There may be something wrong with ${NSPLOTS}. In the last screenshot, you can see the line started with Starting program, no futher parameters recieved by wtdbg2.

I see what you mean, but do not understand why that is. I've seen identical scripts running fine!

ruanjue commented 1 year ago

Try directly run wtdbg2 in your shell. I will debug it if the warning occurs again.