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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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C++/ Python library #257

Closed Lionward closed 1 year ago

Lionward commented 1 year ago

Since I have too many separate small genomic regions that I want to assemble, I would like to run the wtdbg2 assembler internally using c++ or maybe a python library without the need to have a fasta file, is it possible to do that?

ruanjue commented 1 year ago

I have no plan to develop such library. One way is utilizing your memory filesystem, e.g /dev/shm, to generate fasta and output directly to RAM memory.