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ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
GNU General Public License v3.0
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Phased assembly with wtdbg2 available? #268

Open Jerry-bioinformatics opened 7 months ago

Jerry-bioinformatics commented 7 months ago

Hi ruanjue, @ruanjue Many years later, now 2024, can wtdbg2 output a phased assembly in the following modes including primary contigs, alternate contigs, dual assembly, partital phased assembly and so on as described in https://lh3.github.io/2021/04/17/concepts-in-phased-assemblies.?

ruanjue commented 7 months ago

wtdbg2 is not good at phasing genomes. So, please wait for new version, which might come in next year.