Polish command obsolete ( wtpoa-cns missing -d parameter)

ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

GNU General Public License v3.0

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Closed ishengtsai closed 6 years ago

ishengtsai commented 6 years ago

Hi,

I wish to polishing the assembly with bam generated from minimap2 bam, but wtpoa-cns is missing now missing -d option. Please advice.

$samtools view prefix.ctg.lay.map.srt.bam | /home/ijt/wtdbg2/wtpoa-cns -t 40 -d wtdbg2op1.ctg.lay.fa -i - -fo prefix.ctg.lay.2nd.fa

/home/ijt/wtdbg2/wtpoa-cns: invalid option -- 'd' WTPOA-CNS: Consensuser for wtdbg using PO-MSA

ishengtsai commented 6 years ago

just found the option is in the new ver 2.2. Apologise.