run wtdbg2 with multiple nodes in cluster

ruanjue / wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

GNU General Public License v3.0

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run wtdbg2 with multiple nodes in cluster #84

Closed xiaoyezao closed 5 years ago

xiaoyezao commented 5 years ago

Hi, I have a few lay questions:

Is it possible to submit wtdbg2 job to multiple nodes in the cluster?

wtdbg2 use "-i" flag to read in the input files, and i need to list a lot of subreads files one by one after "-i". Are there any easier ways to do this? It's painful to list one by one, as I have dozens of subreads files.

Thanks

ruanjue commented 5 years ago

There is a closed issue about how to run wtdbg2 on parallel nodes.

wtdbg2 [option] *.fa will treat all the .fa files as input.