ruiguo-bio replong issues - Githubissues

ruiguo-bio / replong

source code of the paper "RepLong - de novo repeat discovery from long reads"

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issues

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overlap files restricted to 001 folder

#17 altingia opened 2 years ago
0
makefile errror

#16 helan-1997 closed 2 years ago
0
can you provide again the test files?

#15 helan-1997 closed 2 years ago
0
ERROR: no overlap files supplied

#14 heliziii opened 3 years ago
0
The result files are empty

#13 bbista opened 4 years ago
0
canu failed with 'gatekeeper store exists, but contains no reads'.

#12 maoying0423 closed 4 years ago
3
Canu 1.4 not working when using LSF cluster so pipeline fails

#11 DanJeffries opened 5 years ago
2
empty result.fa

#10 LisaBlazek closed 4 years ago
15
RepLong should not output longer sequences than repeat

#9 bzvew opened 6 years ago
0
Another hardcoded path -- to linenum.R

#8 rsharris opened 6 years ago
9
"GNU split" requirement is misleading.

#7 rsharris closed 6 years ago
2
Is all.out supposed to be all.ovl?

#6 rsharris closed 6 years ago
1
awk fails with "illegal reference to array s"

#5 rsharris opened 6 years ago
3
Meaning of -c option backward?

#4 rsharris closed 6 years ago
4
Canu version and platform hardwired in replong.sh

#3 rsharris opened 6 years ago
6
replong error : no ovb files

#2 ankita86 opened 6 years ago
6
Canu error through RepLong: canu failed with 'gatekeeper store exists, but contains no reads'

#1 LuciaA2 opened 6 years ago
14