Had to modify some global scripts to make them work with nextflow: they should be executable, have a shebang line, and should not use here() to pin against a project root (since they will be called from a random working subdirectory)
Noted a problem when symlinking Rmarkdown files: unless the working/ouput directory is specified properly, a compiled document will be put into the directory containing the target of a link, rather than the link itself.
Reduced the number of repos under analysis in the workflow-comparison section to 3, so that DAG images are readable.
A couple of experiments were included: one to work out how to do parameterised "Hello, World!" and one to work out how to do file-based map-reduce
Add nextflow pipeline for comparison to snakemake
Had to modify some global scripts to make them work with nextflow: they should be executable, have a shebang line, and should not use here() to pin against a project root (since they will be called from a random working subdirectory)
Noted a problem when symlinking Rmarkdown files: unless the working/ouput directory is specified properly, a compiled document will be put into the directory containing the target of a link, rather than the link itself.
Reduced the number of repos under analysis in the workflow-comparison section to 3, so that DAG images are readable.
A couple of experiments were included: one to work out how to do parameterised "Hello, World!" and one to work out how to do file-based map-reduce