List pruned neurons.

[russelljjarvis]

Given that Dan identified the connection matrices contained errors, how is analysis different now that errors have been fixed?

Are less network pruning required.

@danpetty can you still find a way to list which neurons where pruned if you get time?

Ideally no neurons that receive (even unitary) connections should get pruned, only cells that don't output projections onto other neurons should be pruned.

We are interested in neurons, whose state can at least be changed by the network, we should probably be interested in those cells, who can also change the state of others (those that have a unitary output). So I guess we probably shouldn't prune anything from the dynamic simulation.

[danpetty]

Every neuron makes an appearance in at least one of the networks. The only pruning that happens is for graphical purposes to remove neurons that don't receive inputs or outputs in a selection visualization.

[danpetty]

The raw output is below. The groupings show the neurons not displayed in each graph in the order: ii, ee, ei, ie

• 38/122 vertices, named: [1] DG 1 DG 2 DG 3 DG 4 DG 5 CA3 19 CA3 20 CA3 21 CA3 22 CA2 44 [11] CA1 49 CA1 50 CA1 51 SUB 89 SUB 90 EC 92 EC 93 EC 94 EC 95 EC 96 [21] EC 97 EC 98 EC 99 EC 100 EC 101 EC 102 EC 103 EC 104 EC 105 EC 106 [31] EC 107 EC 108 EC 109 EC 110 EC 111 EC 112 EC 113 EC 114
• 84/122 vertices, named: [1] DG 6 DG 7 DG 8 DG 9 DG 10 DG 11 DG 12 DG 13 DG 14 DG 15 [11] DG 16 DG 17 DG 18 CA3 23 CA3 24 CA3 25 CA3 26 CA3 27 CA3 28 CA3 29 [21] CA3 30 CA3 31 CA3 32 CA3 33 CA3 34 CA3 35 CA3 36 CA3 37 CA3 38 CA3 39 [31] CA3 40 CA3 41 CA3 42 CA3 43 CA2 45 CA2 46 CA2 47 CA2 48 CA1 52 CA1 53 [41] CA1 54 CA1 55 CA1 56 CA1 57 CA1 58 CA1 59 CA1 60 CA1 61 CA1 62 CA1 63 [51] CA1 64 CA1 65 CA1 66 CA1 67 CA1 68 CA1 69 CA1 70 CA1 71 CA1 72 CA1 73 [61] CA1 74 CA1 75 CA1 76 CA1 77 CA1 78 CA1 79 CA1 80 CA1 81 CA1 82 CA1 83 [71] CA1 84 CA1 85 CA1 86 CA1 87 CA1 88 SUB 91 EC 115 EC 116 EC 117 EC 118 [81] EC 119 EC 120 EC 121 EC 122
• 2/122 vertices, named: [1] EC 113 EC 122
• 4/122 vertices, named: [1] DG 8 DG 9 EC 112 EC 113