search

rust-bio / rust-bio-tools

A set of command line utilities based on Rust-Bio.
MIT License
182 stars 24 forks source link

feat: Add UPGMA, Neighbor-Joining, and RF-distance to cli tool #200

Closed RagnarGrootKoerkamp closed 4 weeks ago

RagnarGrootKoerkamp commented 2 years ago

Depends on https://github.com/rust-bio/rust-bio/pull/470

This adds CLI wrappers for the algorithms added in that PR.

I could move the code in main.rs into a separate module, but it's so small that's probably not worth it.

RagnarGrootKoerkamp commented 2 years ago

Done

johanneskoester commented 2 years ago

There are some errors now.

RagnarGrootKoerkamp commented 2 years ago

Yes the errors are expected. We first need to merge the other PRs, and bump versions of rust-bio-types and rust-bio https://github.com/rust-bio/rust-bio-types/pull/35 https://github.com/rust-bio/rust-bio/pull/468 https://github.com/rust-bio/rust-bio/pull/469 https://github.com/rust-bio/rust-bio/pull/470

RagnarGrootKoerkamp commented 4 weeks ago

This was a small project that never went anywhere. I don't care for it anymore. If someone wants to continue it feel free to reopen.