rust-bio rust-htslib issues

rust-bio / rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

MIT License

302 stars 77 forks source link

issues

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feat: added sam_flag module

#440 rLannes opened 6 days ago
0
refactor: improved readability for read orientation inference

#439 johanneskoester opened 2 weeks ago
1
[help] get tags is slowly

#438 Liripo closed 1 month ago
2
Record::clone() does not clone header. Is it intended?

#437 Crispy13 closed 1 month ago
0
Weird reference_end() value

#436 Crispy13 opened 2 months ago
0
ci: Add Dependabot

#435 sjackman opened 3 months ago
3
0.47.0 introduced a dependency on libclang

#434 DaGaMs opened 3 months ago
3
Modifying existing bam header line

#433 rickymagner opened 4 months ago
0
fix: build on aarm

#432 FelixMoelder closed 5 months ago
1
fix: build for macOS

#431 FelixMoelder closed 4 months ago
1
fix: in bam record buffer, change the start of the window to the first added item in last iteration

#430 Addimator closed 4 months ago
1
subsetting samples

#429 brentp opened 5 months ago
0
feat: derive PartialEq and Eq for bam:: and bcf::Format

#428 mbhall88 closed 5 months ago
1
get sequence reads from rust_htslib::bam::record::Seq

#427 wdlv closed 6 months ago
2
chore(master): release 0.47.0

#426 github-actions[bot] closed 4 months ago
1
Compiler issue on AArch64 Linux

#425 jakobnissen opened 6 months ago
1
fix: update to hts-sys 2.1.2, which bumps to htslib 1.19

#424 johanneskoester closed 4 months ago
0
error: could not compile `rust-htslib`

#423 knakamura6222053 opened 7 months ago
0
How to access read group info from `Record`?

#422 Crispy13 opened 7 months ago
2
chore(master): release 0.46.0

#421 github-actions[bot] closed 7 months ago
1
fix: fix building libz-sys

#420 FelixMoelder closed 7 months ago
2
feat: making several RecordBuffer methods public

#419 Addimator closed 7 months ago
1
feat: Add fasta::build function + FaidxBuildError

#418 PB-DB closed 6 months ago
1
fix: Panic on trailing omitted FORMAT records

#417 fennerm closed 6 months ago
1
Seek/Tell for BGZF Module

#416 rmhubley opened 9 months ago
0
fix: Loosen acceptable types to support current linux build on aarch64

#415 rdeaton-freenome closed 8 months ago
3
[Feature Request] An option for pileup similar with `truncate` in pysam

#414 Crispy13 opened 9 months ago
0
chore(master): release 0.45.0

#413 github-actions[bot] closed 8 months ago
1
error[E0308]: mismatched types - expected raw pointer `*mut u8` during cross compilation

#412 Adoni5 closed 8 months ago
0
BCF reader partial unpacking for site-only queries

#411 bguo068 opened 11 months ago
0
feat: add faidx_seq_len function

#410 pblischak closed 10 months ago
0
Are there some default filters in alignment pileup?

#409 huangnengCSU opened 1 year ago
0
feat: Add rust_htslib::bcf::index::build

#408 PB-DB closed 6 months ago
5
Panic on omitted trailing FORMAT fields

#407 fennerm opened 1 year ago
2
no method named `base` found for struct `rust_htslib::bam::Record` in the current scope

#406 Crispy13 closed 6 months ago
3
How to operate on Format/Info fields for Records?

#405 rickymagner opened 1 year ago
2
Reading bam from s3

#404 wdecoster opened 1 year ago
3
Question: multi-threaded reading of BAM files

#403 rashidalabri opened 1 year ago
0
Qusestion: why CIGAR output write result different with `CigarString`?

#402 wjwei-handsome opened 1 year ago
0
[bug] Memory leak when using `faidx::Reader::fetch_seq()` ?

#401 MaelLefeuvre opened 1 year ago
10
Are there filter options available for pileup?

#400 Crispy13 opened 1 year ago
4
chore(master): release 0.44.1

#399 github-actions[bot] closed 1 year ago
1
fix: use correct return value in bcf_get_format and bcf_get_info_values

#398 Marlin-Na closed 1 year ago
5
fix: include doctests in test coverage calculations

#397 dlaehnemann closed 1 year ago
2
fix: makes Header.to_hashmap() not call unwrap.

#396 ArtRand opened 1 year ago
3
chore(master): release 0.44.0

#395 github-actions[bot] closed 1 year ago
1
feat: implement Clone for bcf::Record

#394 astaric closed 1 year ago
1
fix: strand() doesn't need mut.

#393 brentp closed 1 year ago
1
chore(master): release 0.43.1

#392 github-actions[bot] closed 1 year ago
1
fix: implement Drop for faidx::Reader, destroying the fai handle

#391 tedil closed 1 year ago
1