rust-bio rust-htslib issues

rust-bio / rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

MIT License

308 stars 80 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

fix: memory leak in faidx when fetching sequences

#455 brentp opened 1 day ago
2
Update libdeflate (mirroring issue in hts-sys)

#454 davidlougheed opened 3 days ago
0
feat: move empty_record to header

#453 brentp opened 5 days ago
1
chore(master): release 0.48.0

#452 github-actions[bot] closed 1 week ago
1
chore(master): release 0.47.1

#451 github-actions[bot] closed 1 week ago
1
build(deps): update derive-new requirement from 0.5 to 0.7

#450 dependabot[bot] closed 1 week ago
1
build(deps): update pretty_assertions requirement from 0.6 to 1.4

#449 dependabot[bot] closed 1 week ago
1
build(deps): update thiserror requirement from 1 to 2

#448 dependabot[bot] closed 1 week ago
1
fix: allow leading deletions in read_pos method of CigarStringView.

#447 johanneskoester closed 1 week ago
1
rust-htslib panics on bam record.contig() call

#446 xosxos opened 2 weeks ago
0
[Feature request] `query_position_or_next` method for `Alignment`

#445 Crispy13 opened 3 weeks ago
0
fix: return error when bgzf_open fails to open a file

#444 ghuls closed 1 week ago
1
feat: Add to_vcf_string method for bcf::Record

#443 ctsa closed 1 week ago
1
Cargo test leading to "unsafe precondition(s) violated"

#442 ebioman opened 1 month ago
0
Embedding the reference into CRAM outputs (embed_ref=1)

#441 mrvollger opened 1 month ago
0
feat: added sam_flag module

#440 rLannes opened 1 month ago
0
refactor: improved readability for read orientation inference

#439 johanneskoester closed 1 week ago
1
[help] get tags is slowly

#438 Liripo closed 2 months ago
2
Record::clone() does not clone header. Is it intended?

#437 Crispy13 closed 3 months ago
0
Weird reference_end() value

#436 Crispy13 opened 4 months ago
0
ci: Add Dependabot

#435 sjackman closed 1 week ago
3
0.47.0 introduced a dependency on libclang

#434 DaGaMs opened 4 months ago
4
Modifying existing bam header line

#433 rickymagner opened 6 months ago
0
fix: build on aarm

#432 FelixMoelder closed 6 months ago
1
fix: build for macOS

#431 FelixMoelder closed 6 months ago
1
fix: in bam record buffer, change the start of the window to the first added item in last iteration

#430 Addimator closed 6 months ago
1
subsetting samples

#429 brentp opened 7 months ago
0
feat: derive PartialEq and Eq for bam:: and bcf::Format

#428 mbhall88 closed 7 months ago
1
get sequence reads from rust_htslib::bam::record::Seq

#427 wdlv closed 7 months ago
2
chore(master): release 0.47.0

#426 github-actions[bot] closed 6 months ago
1
Compiler issue on AArch64 Linux

#425 jakobnissen opened 8 months ago
1
fix: update to hts-sys 2.1.2, which bumps to htslib 1.19

#424 johanneskoester closed 6 months ago
0
error: could not compile `rust-htslib`

#423 knakamura6222053 opened 9 months ago
0
How to access read group info from `Record`?

#422 Crispy13 opened 9 months ago
2
chore(master): release 0.46.0

#421 github-actions[bot] closed 9 months ago
1
fix: fix building libz-sys

#420 FelixMoelder closed 9 months ago
2
feat: making several RecordBuffer methods public

#419 Addimator closed 9 months ago
1
feat: Add fasta::build function + FaidxBuildError

#418 PB-DB closed 8 months ago
1
fix: Panic on trailing omitted FORMAT records

#417 fennerm closed 8 months ago
1
Seek/Tell for BGZF Module

#416 rmhubley opened 10 months ago
0
fix: Loosen acceptable types to support current linux build on aarch64

#415 rdeaton-freenome closed 9 months ago
3
[Feature Request] An option for pileup similar with `truncate` in pysam

#414 Crispy13 opened 11 months ago
0
chore(master): release 0.45.0

#413 github-actions[bot] closed 9 months ago
1
error[E0308]: mismatched types - expected raw pointer `*mut u8` during cross compilation

#412 Adoni5 closed 9 months ago
0
BCF reader partial unpacking for site-only queries

#411 bguo068 opened 1 year ago
0
feat: add faidx_seq_len function

#410 pblischak closed 11 months ago
0
Are there some default filters in alignment pileup?

#409 huangnengCSU opened 1 year ago
0
feat: Add rust_htslib::bcf::index::build

#408 PB-DB closed 8 months ago
5
Panic on omitted trailing FORMAT fields

#407 fennerm opened 1 year ago
2
no method named `base` found for struct `rust_htslib::bam::Record` in the current scope

#406 Crispy13 closed 8 months ago
3