Closed vinayrajput0005 closed 1 year ago
Pango lineage file is correct Lineages.csv (https://github.com/cov-lineages/pango-designation/blob/master/lineages.csv)
hello, this error implies the file have a line without any commas, can you run this command on the file and report back the results ?
grep -v , data/pango_designation/lineages.csv -m10
Pls look on the error.
I removed PANGO_DESIGNATIONS_VERSION='v1.16' from shell command of script. Now it is downloading the latest lineages.csv file from the git repository. v.1.16 have some issue with the lineage file
error.log Getting error while split_fasta_lineages. Script is not able to separate the linage data from GISAID full data.
Traceback (most recent call last): File "/data/Student_Data/Vinay/LCS-master/scripts/split_fasta_by_lineages2.py", line 52, in
fn,lineage = l.rstrip().split(",")
ValueError: not enough values to unpack (expected 2, got 1)