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rvalieris / LCS

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Problem with tags file #3

Closed aharring83 closed 2 years ago

aharring83 commented 2 years ago

I made a folder "tags_pool_make" and put a file with my samples names in that folder called make. When I execute pipeline, I get the following errors: snakemake --config markers=pango dataset=make --cores 44 --resources mem_gb=100

Building DAG of jobs... InputFunctionException in line 54 of /data2/harrington/covid/LCS/rules/pools-pipe.py: Error: Exception: tags file not found: data/tags_pool_make Wildcards: z=make Traceback: File "/data2/harrington/covid/LCS/rules/pools-pipe.py", line 55, in File "/data2/harrington/covid/LCS/rules/config.py", line 40, in get_tags File "/data2/harrington/covid/LCS/rules/config.py", line 36, in get_tags_file

rvalieris commented 2 years ago

hello,

Exception: tags file not found: data/tags_pool_make

you need to create the file data/tags_pool_make with the sample names, not a folder.

aharring83 commented 2 years ago

Thank you, it works!